## htsjdk.samtools.metrics.StringHeader
# CheckFingerprint INPUT=in/NA12891.over.fingerprints.r1.sam OUTPUT=picard/fingerprint GENOTYPES=in/NA12891.fp.vcf HAPLOTYPE_MAP=in/Homo_sapiens_assembly19.haplotype_database.subset.txt    GENOTYPE_LOD_THRESHOLD=5.0 IGNORE_READ_GROUPS=false EXIT_CODE_WHEN_EXPECTED_SAMPLE_NOT_FOUND=1 EXIT_CODE_WHEN_NO_VALID_CHECKS=2 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:43:28 HST 2026

## METRICS CLASS	picard.analysis.FingerprintingDetailMetrics
READ_GROUP	SAMPLE	SNP	SNP_ALLELES	CHROM	POSITION	EXPECTED_GENOTYPE	OBSERVED_GENOTYPE	LOD	OBS_A	OBS_B
HJYN2CCXX160123.1.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.239099	0	0
HJYN2CCXX160123.1.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HJYN2CCXX160123.1.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.018923	0	1
HJYN2CCXX160123.1.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HJYN2CCXX160123.1.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	2.964789	2	1
HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA	NA12891	rs7555566	Ag	1	14804874	AA	AA	1.140631	3	0
HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA	NA12891	rs17272796	Ct	3	17077268	CT	CT	1.982025	1	2
HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.322181	0	2
HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269824	1	0
HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA	NA12891	rs314605	Ct	7	4490854	CT	CT	1.933448	1	1
HK35NCCXX160204.1.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	1.741418	5	0
HK35NCCXX160204.1.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CC	0.081025	2	0
HK35NCCXX160204.1.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.620293	0	3
HK35NCCXX160204.1.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HK35NCCXX160204.1.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HK35NCCXX160204.2.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539581	1	0
HK35NCCXX160204.2.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	TT	0.217648	0	1
HK35NCCXX160204.2.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK35NCCXX160204.2.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HK35NCCXX160204.2.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.565522	0	1
HM3G2CCXX160308.2.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	7.753041	25	0
HM3G2CCXX160308.2.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	12.97145	7	9
HM3G2CCXX160308.2.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	4.227156	0	15
HM3G2CCXX160308.2.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	5.675817	19	0
HM3G2CCXX160308.2.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	16.555652	8	7
HK3T5CCXX160204.1.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539694	1	0
HK3T5CCXX160204.1.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK3T5CCXX160204.1.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.02184	0	1
HK3T5CCXX160204.1.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.270078	1	0
HK3T5CCXX160204.1.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HK3T5CCXX160204.2.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	1.138204	3	0
HK3T5CCXX160204.2.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK3T5CCXX160204.2.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK3T5CCXX160204.2.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269966	1	0
HK3T5CCXX160204.2.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	0.566504	1	0
HK3T5CCXX160204.3.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.840468	2	0
HK3T5CCXX160204.3.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CC	0.381668	3	0
HK3T5CCXX160204.3.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.02184	0	1
HK3T5CCXX160204.3.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269966	1	0
HK3T5CCXX160204.3.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HK3T5CCXX160204.4.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.239099	0	0
HK3T5CCXX160204.4.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK3T5CCXX160204.4.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.622805	0	3
HK3T5CCXX160204.4.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	1.169892	4	0
HK3T5CCXX160204.4.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	0.265961	2	0
HK3T5CCXX160204.5.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539581	1	0
HK3T5CCXX160204.5.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	TT	0.518243	0	2
HK3T5CCXX160204.5.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.322435	0	2
HK3T5CCXX160204.5.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HK3T5CCXX160204.5.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HK3T5CCXX160204.6.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539581	1	0
HK3T5CCXX160204.6.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK3T5CCXX160204.6.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK3T5CCXX160204.6.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.570419	2	0
HK3T5CCXX160204.6.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	1.733219	1	2
HK3T5CCXX160204.7.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.840177	2	0
HK3T5CCXX160204.7.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	2.481322	1	1
HK3T5CCXX160204.7.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.322002	0	2
HK3T5CCXX160204.7.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269966	1	0
HK3T5CCXX160204.7.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.565522	0	1
HK3T5CCXX160204.8.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.838737	2	0
HK3T5CCXX160204.8.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	TT	0.21383	0	1
HK3T5CCXX160204.8.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.022042	0	1
HK3T5CCXX160204.8.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.270078	1	0
HK3T5CCXX160204.8.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	1.733622	1	2
HJYFJCCXX160204.4.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539694	1	0
HJYFJCCXX160204.4.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	TT	0.217648	0	1
HJYFJCCXX160204.4.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.318505	0	2
HJYFJCCXX160204.4.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HJYFJCCXX160204.4.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.865864	0	2
HJYFJCCXX160204.5.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.53944	1	0
HJYFJCCXX160204.5.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.218742	1	0
HJYFJCCXX160204.5.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.621835	0	3
HJYFJCCXX160204.5.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.871246	3	0
HJYFJCCXX160204.5.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	2.465694	3	1
HJYFJCCXX160204.6.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.840125	2	0
HJYFJCCXX160204.6.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HJYFJCCXX160204.6.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HJYFJCCXX160204.6.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269966	1	0
HJYFJCCXX160204.6.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.866207	0	2
HJYFJCCXX160204.7.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539581	1	0
HJYFJCCXX160204.7.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	TT	0.517302	0	2
HJYFJCCXX160204.7.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.02184	0	1
HJYFJCCXX160204.7.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HJYFJCCXX160204.7.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.565268	0	1
HJYFJCCXX160204.8.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.839781	2	0
HJYFJCCXX160204.8.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HJYFJCCXX160204.8.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HJYFJCCXX160204.8.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.570307	2	0
HJYFJCCXX160204.8.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	0.567332	1	0
HK35MCCXX160204.1.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539581	1	0
HK35MCCXX160204.1.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK35MCCXX160204.1.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.02184	0	1
HK35MCCXX160204.1.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269966	1	0
HK35MCCXX160204.1.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	2.033448	1	1
HK35MCCXX160204.2.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539694	1	0
HK35MCCXX160204.2.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK35MCCXX160204.2.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.322181	0	2
HK35MCCXX160204.2.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.570449	2	0
HK35MCCXX160204.2.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.565522	0	1
HK35MCCXX160204.3.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.239099	0	0
HK35MCCXX160204.3.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CC	0.078921	2	0
HK35MCCXX160204.3.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.623007	0	3
HK35MCCXX160204.3.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.270078	1	0
HK35MCCXX160204.3.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.565612	0	1
HK35MCCXX160204.4.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.239099	0	0
HK35MCCXX160204.4.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	2.381643	1	1
HK35MCCXX160204.4.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	GG	0.322525	0	2
HK35MCCXX160204.4.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AG	0.030517	0	0
HK35MCCXX160204.4.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	1.933622	1	2
HK35MCCXX160204.5.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539783	1	0
HK35MCCXX160204.5.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CC	0.080235	2	0
HK35MCCXX160204.5.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK35MCCXX160204.5.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269421	1	0
HK35MCCXX160204.5.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	CT	0.566504	1	0
HK35MCCXX160204.6.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.239099	0	0
HK35MCCXX160204.6.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK35MCCXX160204.6.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK35MCCXX160204.6.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269966	1	0
HK35MCCXX160204.6.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HK35MCCXX160204.7.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.539694	1	0
HK35MCCXX160204.7.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CT	0.082835	0	0
HK35MCCXX160204.7.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK35MCCXX160204.7.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269824	1	0
HK35MCCXX160204.7.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HK35MCCXX160204.8.TATCCAGG	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.840266	2	0
HK35MCCXX160204.8.TATCCAGG	NA12891	rs17272796	Ct	3	17077268	CT	CC	0.078825	2	0
HK35MCCXX160204.8.TATCCAGG	NA12891	rs6834736	Cg	4	57194525	GG	CG	0.278643	0	0
HK35MCCXX160204.8.TATCCAGG	NA12891	rs2862058	Ag	5	156355375	AA	AA	0.269824	1	0
HK35MCCXX160204.8.TATCCAGG	NA12891	rs314605	Ct	7	4490854	CT	TT	0.264927	0	0
HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA	NA12891	rs7555566	Ag	1	14804874	AA	AA	0.84029	2	0
HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA	NA12891	rs17272796	Ct	3	17077268	CT	CT	3.879356	2	3
HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA	NA12891	rs6834736	Cg	4	57194525	GG	GG	1.22263	0	5
HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA	NA12891	rs2862058	Ag	5	156355375	AA	AA	1.171606	4	0
HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA	NA12891	rs314605	Ct	7	4490854	CT	TT	1.166092	0	3


