## htsjdk.samtools.metrics.StringHeader
# CheckFingerprint INPUT=in/NA12891.over.fingerprints.r1.sam OUTPUT=picard/fingerprint GENOTYPES=in/NA12891.fp.vcf HAPLOTYPE_MAP=in/Homo_sapiens_assembly19.haplotype_database.subset.txt    GENOTYPE_LOD_THRESHOLD=5.0 IGNORE_READ_GROUPS=false EXIT_CODE_WHEN_EXPECTED_SAMPLE_NOT_FOUND=1 EXIT_CODE_WHEN_NO_VALID_CHECKS=2 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:43:28 HST 2026

## METRICS CLASS	picard.analysis.FingerprintingSummaryMetrics
READ_GROUP	SAMPLE	LL_EXPECTED_SAMPLE	LL_RANDOM_SAMPLE	LOD_EXPECTED_SAMPLE	HAPLOTYPES_WITH_GENOTYPES	HAPLOTYPES_CONFIDENTLY_CHECKED	HAPLOTYPES_CONFIDENTLY_MATCHING	HET_AS_HOM	HOM_AS_HET	HOM_AS_OTHER_HOM
HJYN2CCXX160123.1.TATCCAGG	NA12891	-1.243266	-1.994854	0.751588	5	0	0	0	0	0
HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA	NA12891	-2.329425	-3.893261	1.563836	5	0	0	0	0	0
HK35NCCXX160204.1.TATCCAGG	NA12891	-1.900644	-2.577427	0.676783	5	0	0	0	0	0
HK35NCCXX160204.2.TATCCAGG	NA12891	-2.153618	-1.975829	-0.177789	5	0	0	0	0	0
HM3G2CCXX160308.2.TATCCAGG	NA12891	-1.996682	-3.954197	1.957515	5	4	4	0	0	0
HK3T5CCXX160204.1.TATCCAGG	NA12891	-1.711907	-2.290908	0.579002	5	0	0	0	0	0
HK3T5CCXX160204.2.TATCCAGG	NA12891	-1.783239	-2.520048	0.736808	5	0	0	0	0	0
HK3T5CCXX160204.3.TATCCAGG	NA12891	-2.912415	-3.341041	0.428626	5	0	0	0	0	0
HK3T5CCXX160204.4.TATCCAGG	NA12891	-2.213909	-3.319664	1.105755	5	0	0	0	0	0
HK3T5CCXX160204.5.TATCCAGG	NA12891	-2.104335	-2.318815	0.21448	5	0	0	0	0	0
HK3T5CCXX160204.6.TATCCAGG	NA12891	-1.356682	-2.194382	0.8377	5	0	0	0	0	0
HK3T5CCXX160204.7.TATCCAGG	NA12891	-2.83809	-3.719447	0.881356	5	0	0	0	0	0
HK3T5CCXX160204.8.TATCCAGG	NA12891	-2.921292	-3.920281	0.998989	5	0	0	0	0	0
HJYFJCCXX160204.4.TATCCAGG	NA12891	-3.04781	-3.031142	-0.016668	5	0	0	0	0	0
HJYFJCCXX160204.5.TATCCAGG	NA12891	-2.761332	-4.256269	1.494938	5	0	0	0	0	0
HJYFJCCXX160204.6.TATCCAGG	NA12891	-2.034606	-1.942895	-0.091712	5	0	0	0	0	0
HJYFJCCXX160204.7.TATCCAGG	NA12891	-3.129265	-3.031585	-0.09768	5	0	0	0	0	0
HJYFJCCXX160204.8.TATCCAGG	NA12891	-1.749765	-2.539138	0.789373	5	0	0	0	0	0
HK35MCCXX160204.1.TATCCAGG	NA12891	-2.194053	-3.238111	1.044058	5	0	0	0	0	0
HK35MCCXX160204.2.TATCCAGG	NA12891	-2.501828	-3.091205	0.589377	5	0	0	0	0	0
HK35MCCXX160204.3.TATCCAGG	NA12891	-3.16075	-3.620093	0.459344	5	0	0	0	0	0
HK35MCCXX160204.4.TATCCAGG	NA12891	-1.499251	-2.692322	1.193071	5	0	0	0	0	0
HK35MCCXX160204.5.TATCCAGG	NA12891	-2.934929	-3.577604	0.642675	5	0	0	0	0	0
HK35MCCXX160204.6.TATCCAGG	NA12891	-0.552833	-0.737247	0.184413	5	0	0	0	0	0
HK35MCCXX160204.7.TATCCAGG	NA12891	-0.953278	-1.246702	0.293424	5	0	0	0	0	0
HK35MCCXX160204.8.TATCCAGG	NA12891	-1.899821	-2.230549	0.330728	5	0	0	0	0	0
HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA	NA12891	-3.054669	-3.736845	0.682177	5	0	0	0	0	0


