## htsjdk.samtools.metrics.StringHeader
# CollectVariantCallingMetrics INPUT=in/mini.vcf OUTPUT=picard/vc DBSNP=in/mini.dbsnp.vcf    GVCF_INPUT=false THREAD_COUNT=1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sat Oct 24 21:43:40 HST 2026

## METRICS CLASS	picard.vcf.CollectVariantCallingMetrics$VariantCallingDetailMetrics
SAMPLE_ALIAS	HET_HOMVAR_RATIO	PCT_GQ0_VARIANTS	TOTAL_GQ0_VARIANTS	TOTAL_HET_DEPTH	TOTAL_SNPS	NUM_IN_DB_SNP	NOVEL_SNPS	FILTERED_SNPS	PCT_DBSNP	DBSNP_TITV	NOVEL_TITV	TOTAL_INDELS	NOVEL_INDELS	FILTERED_INDELS	PCT_DBSNP_INDELS	NUM_IN_DB_SNP_INDELS	DBSNP_INS_DEL_RATIO	NOVEL_INS_DEL_RATIO	TOTAL_MULTIALLELIC_SNPS	NUM_IN_DB_SNP_MULTIALLELIC	TOTAL_COMPLEX_INDELS	NUM_IN_DB_SNP_COMPLEX_INDELS	SNP_REFERENCE_BIAS	NUM_SINGLETONS
NA20801	1.44898	0	0	1701	112	61	51	73	0.544643	6.625	3.25	7	3	3	0.571429	4	0.333333	0	0	0	1	0	0.545561	5
NA20803	1.170732	0	0	1178	80	43	37	67	0.5375	4.375	3.111111	8	4	3	0.5	4	0	0	0	0	1	0	0.514431	0
NA20805	1.638889	0	0	1251	87	45	42	53	0.517241	4.625	2.5	7	4	5	0.428571	3	0.5	0	1	1	0	0	0.4996	1
NA18960	1.028986	0	0	2566	129	70	59	77	0.542636	6	2.470588	9	3	3	0.666667	6	0.5	0	1	1	1	0	0.525721	1
NA18520	1.423729	0	0	3306	134	75	59	71	0.559702	7.333333	2.470588	6	3	4	0.5	3	0.5	0.5	1	1	2	0	0.519661	4
NA18522	1.033333	0	0	2494	115	68	47	70	0.591304	4.666667	2.615385	6	4	6	0.333333	2	0	0	0	0	1	0	0.532478	7
NA12341	0.901961	0	0	832	88	43	45	63	0.488636	3.777778	2.214286	8	4	2	0.5	4	0	0	0	0	1	0	0.503606	5
HG01260	0.793103	0	0	1434	92	48	44	57	0.521739	3	2.384615	10	4	6	0.6	6	0.2	0	1	1	1	0	0.54742	4
HG01461	0.891304	0	0	916	79	42	37	53	0.531646	7.4	2.7	7	4	5	0.428571	3	0	0	0	0	1	0	0.505459	3
HG00371	2	0	0	1893	103	53	50	69	0.514563	7.833333	2.333333	7	2	8	0.714286	5	0.25	0	2	2	2	0	0.519282	5
NA19092	1.516129	0	0	3194	146	78	68	81	0.534247	6.8	2.4	8	4	4	0.5	4	0.333333	0	1	1	1	0	0.514402	7
HG00610	0.931034	0	0	1273	102	49	53	70	0.480392	7.166667	2.533333	9	3	4	0.666667	6	0.5	0	1	1	0	0	0.519246	4
NA19703	1.64	0	0	1992	126	58	68	71	0.460317	7.285714	3	4	2	5	0.5	2	1	1	1	1	1	0	0.535643	6
NA18574	1.425532	0	0	1561	103	61	42	65	0.592233	9.166667	2.230769	10	4	4	0.6	6	0.5	0	0	0	1	0	0.529148	3
NA19102	2.5	0	0	4812	154	94	60	77	0.61039	6.833333	2.75	11	4	5	0.636364	7	0.166667	1	2	2	1	0	0.513716	18
NA19067	2	0	0	2264	116	64	52	79	0.551724	9.666667	2.466667	8	4	6	0.5	4	0.333333	0	1	1	1	0	0.511042	3
NA20798	1.162791	0	0	1283	86	46	40	62	0.534884	4.75	2.333333	6	3	3	0.5	3	0	0	0	0	1	0	0.526111	2
NA06989	0.365079	0	0	639	78	45	33	58	0.576923	5.428571	2.666667	8	4	6	0.5	4	0	0	0	0	0	0	0.552426	3
HG01094	4.241379	0	0	4672	142	78	64	82	0.549296	5.5	2.764706	9	4	5	0.555556	5	0.25	0	0	0	1	0	0.520334	15
HG00160	0.72549	0.022727	2	882	81	44	37	56	0.54321	6.333333	2.7	6	3	2	0.5	3	0	0	0	0	1	0	0.510204	3
HG00123	1.473684	0	0	1471	84	44	40	53	0.52381	6.333333	2.333333	8	4	4	0.5	4	0	0	0	0	2	0	0.5017	1
HG01256	1.617647	0	0	1263	83	40	43	63	0.481928	5.666667	2.583333	5	3	6	0.4	2	0	0	0	0	1	0	0.541568	1
HG00404	1.306122	0	0	1620	102	55	47	66	0.539216	4.5	2.133333	8	3	3	0.625	5	0.666667	0	1	1	2	0	0.522222	3
NA19819	1.634146	0	0	1487	100	55	45	73	0.55	10	2.214286	7	3	3	0.571429	4	0.333333	0	0	0	1	0	0.512441	2
NA18986	0.963636	0	0	2226	99	53	46	75	0.535354	6.571429	1.875	8	3	4	0.625	5	0.666667	0	1	1	0	0	0.516173	6
NA19711	1.553846	0	0	2165	154	86	68	69	0.558442	8.555556	2.578947	9	4	6	0.555556	5	0.25	1	1	1	2	0	0.505774	11
NA18867	3.433333	0	0	4621	125	63	62	78	0.504	8	3.133333	5	2	4	0.6	3	0.5	0	1	1	2	0	0.511794	10
NA19675	0.381818	0	0	303	69	35	34	50	0.507246	4.833333	2.777778	7	4	5	0.428571	3	0	0	0	0	0	0	0.554455	1
NA19474	2.404255	0	0	5396	151	84	67	91	0.556291	9.5	3.466667	8	4	6	0.5	4	0.333333	0.333333	0	0	1	0	0.527428	10
NA20787	0.631579	0	0	824	85	44	41	47	0.517647	5.285714	3.1	7	3	5	0.571429	4	0	0	0	0	1	0	0.507282	2
HG01488	1.46	0	0	1469	113	53	60	62	0.469027	7.833333	3	9	4	5	0.555556	5	0.25	0	0	0	1	0	0.516678	1
HG01048	0.882353	0	0	1586	88	52	36	73	0.590909	4.777778	2.272727	7	3	3	0.571429	4	0.333333	0	0	0	1	0	0.505044	5
HG01247	1.363636	0	0	1366	92	51	41	66	0.554348	5.375	2.153846	11	4	7	0.636364	7	0.166667	0	1	1	0	0	0.535871	1
HG00551	1.761905	0	0	2768	107	59	48	66	0.551402	4.363636	2.692308	7	4	6	0.428571	3	0.5	0	0	0	2	0	0.536127	11
HG00116	1.085106	0	0	1617	92	42	50	56	0.456522	6	2.125	6	2	6	0.666667	4	0	0	0	0	0	0	0.515152	3
HG00158	0.403509	0	0	648	73	44	29	55	0.60274	4.5	3.142857	7	4	6	0.428571	3	0	0	0	0	0	0	0.550926	2
HG00311	1.234043	0	0	1066	97	53	44	56	0.546392	5.625	2.384615	7	3	4	0.571429	4	0	0	0	0	1	0	0.546904	6
NA19908	1.166667	0	0	1072	95	52	43	54	0.547368	3.727273	2.071429	8	4	2	0.5	4	0.333333	0	0	0	1	0	0.513993	7
HG00635	0.894737	0	0	921	99	55	44	67	0.555556	5.111111	1.933333	7	2	5	0.714286	5	0.666667	0	1	1	1	0	0.529859	6
NA18634	0.602941	0	0	1438	97	52	45	83	0.536082	4.777778	2.75	10	3	5	0.7	7	0.4	0	1	1	1	0	0.506954	4
NA19725	1.039216	0	0	1003	98	55	43	51	0.561224	3.583333	2.071429	5	2	6	0.6	3	0	0	1	1	0	0	0.481555	1
NA19920	2.195122	0	0	2152	123	65	58	70	0.528455	15.25	3.833333	7	2	4	0.714286	5	0.25	0	0	0	1	0	0.519052	13
NA19004	0.619718	0	0	1360	103	62	41	72	0.601942	4.166667	2.153846	11	4	5	0.636364	7	0.4	0	1	1	0	0	0.55	5
NA18510	1.240741	0	0	2393	114	62	52	51	0.54386	7.857143	2.25	6	3	5	0.5	3	0.5	0	1	1	0	0	0.509402	15
HG00380	0.630435	0	0	671	68	36	32	61	0.529412	8	2.2	5	3	4	0.4	2	0	0	0	0	2	0	0.494784	2
HG00265	1.918919	0	0	1871	100	53	47	64	0.53	4.888889	2.357143	6	2	5	0.666667	4	0.333333	0	0	0	2	0	0.500267	7
NA11919	0.636364	0	0	687	78	46	32	32	0.589744	5.571429	3	11	5	5	0.545455	6	0	0	0	0	1	0	0.502183	1
HG01079	0.623188	0	0	1205	104	53	51	80	0.509615	4.888889	2.923077	6	2	2	0.666667	4	1	0	2	2	0	0	0.495436	3
NA11918	0.517241	0	0	1086	82	44	38	50	0.536585	5.285714	2.8	5	3	5	0.4	2	0	0	0	0	1	0	0.493554	3
HG00628	0.961538	0	0	987	93	54	39	64	0.580645	6.714286	2.545455	8	3	6	0.625	5	0.666667	0	1	1	0	0	0.555218	3


