# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# Jupyter
.ipynb_checkpoints/
*.ipynb_checkpoints

# Data files
*.h5ad
*.h5
*.hdf5

# IDEs
.vscode/
.cursor/
.idea/
*.swp
*.swo
*~

# Keep the launch.json file for debugging configurations
!.vscode/launch.json

# OS
.DS_Store
Thumbs.db

# Environment
venv/
env/
ENV/
.venv/

# AI
.claude/
CLAUDE.md
AGENT.md

# Lock files
uv.lock