.coveragerc
.dockerignore
.gitignore
.readthedocs.yml
ARCHITECTURE.md
AUTHORS.rst
CHANGELOG.rst
CLAUDE.md
CONTRIBUTING.rst
DISCLAIMER
Dockerfile
Dockerfile.dev
LICENSE.txt
MANIFEST.in
QUICKSTART.md
README.md
README.rst
REFERENCE.md
TODO.md
agent_config.json
api_updated_example.py
cli_updated_example.py
config-extract.json
config.example.json
convert_ontology.py
docker-compose.dev.yml
docker-compose.override.yml.example
docker-compose.yml
embedding_visualization.png
examples_workflows.py
graphaide_docker_build.sh
pyproject.toml
run_graph_aide.py
setup.cfg
setup.py
start-graphaide-dev.sh
start-graphaide-prod.sh
tox.ini
data/PNNL.out.json
data/PNNL.rs-OntoKG.json
data/PNNL.rs.txt
data/PNNL.rsOntoKG.json
data/PNNL.txt
data/PNNL22.rs-OntoKG.json
data/PNNLDay.out.json
data/PNNL_About.pdf
data/RGTnseqData.txt
data/cyberkg.json
data/cyberkg.txt
data/experiments.pdf
docs/Makefile
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
scripts/windows/graphaide_docker_build.ps1
scripts/windows/start-graphaide-dev.ps1
scripts/windows/start-graphaide-prod.ps1
src/graphaide.egg-info/PKG-INFO
src/graphaide.egg-info/SOURCES.txt
src/graphaide.egg-info/dependency_links.txt
src/graphaide.egg-info/entry_points.txt
src/graphaide.egg-info/not-zip-safe
src/graphaide.egg-info/requires.txt
src/graphaide.egg-info/scm_file_list.json
src/graphaide.egg-info/scm_version.json
src/graphaide.egg-info/top_level.txt
src/graphgen/__init__.py
src/graphgen/api.py
src/graphgen/cli.py
src/graphgen/core.py
src/graphgen/v2/GraphDBManager.py
src/graphgen/v2/ModelManager.py
src/graphgen/v2/VectorStoreManager.py
src/graphgen/v2/__init__.py
src/graphgen/v2/functionnode.py
src/graphgen/v2/globalconfig.py
src/graphgen/v2/mcp_server.py
src/graphgen/v2/query.py
src/graphgen/v2/state.py
src/graphgen/v2/tools.py
src/graphgen/v2/utils.py
src/graphgen/v2/agents/AgentManager.py
src/graphgen/v2/agents/__init__.py
src/graphgen/v2/agents/base.py
src/graphgen/v2/agents/edgesloader.py
src/graphgen/v2/agents/edgetable2textgenerator.py
src/graphgen/v2/agents/embeddingprojector.py
src/graphgen/v2/agents/embeddingvisualizer.py
src/graphgen/v2/agents/extractmerger.py
src/graphgen/v2/agents/extractor.py
src/graphgen/v2/agents/intentpredictor.py
src/graphgen/v2/agents/neo4jloader.py
src/graphgen/v2/agents/neo4jpostprocessor.py
src/graphgen/v2/agents/neo4jqueryrunner.py
src/graphgen/v2/agents/nodes4edgesloader.py
src/graphgen/v2/agents/nodesloader.py
src/graphgen/v2/agents/ontologygenerator.py
src/graphgen/v2/agents/ontologyloader.py
src/graphgen/v2/agents/questiongraphgenerator.py
src/graphgen/v2/agents/simpleagent.py
src/graphgen/v2/agents/simplerag.py
src/graphgen/v2/agents/textaugmentor.py
src/graphgen/v2/agents/vectordbloader.py
src/graphgen/v2/utils/__init__.py
src/graphgen/v2/utils/image_utils.py
src/graphgen/v2/workflows/KGIngest.py
src/graphgen/v2/workflows/__init__.py
src/graphgen/v2/workflows/base.py
src/graphgen/v2/workflows/manager.py
src/graphgen/v2/workflows/retriever_factory.py
src/graphgen/v2/workflows/schemas.py
src/graphgen/v2/workflows/utils.py
templates/edgesloader.template
templates/edgetable2textgenerator.template
templates/extractor.template
templates/extractor_ontology.template
templates/intentpredictor.template
templates/neo4jloader.template
templates/nodes4edgesloader.template
templates/nodesloader.template
templates/questiongraphgenerator.template
templates/simplerag.template
templates/textaugmentor.template
tests/test_qdrant_image_demo.py
tests/test_skeleton.py
tests/__pycache__/conftest.cpython-311-pytest-8.4.1.pyc.66736
tests/notebooks/GraphAideLogo_Label_Final.png
tests/notebooks/amazon_neptune.txt