{% include 'intake.html' %}
{% if use_orthofisher %}
{% include 'orthofisher.html' %}
{% else %}
{% include 'orthofinder.html' %}
{% endif %}
{% include 'alignment.html' %}
{% if use_supermatrix %}
{% include 'supermatrix.html' %}
{% endif %}
{% if use_supertree %}
{% include "genetree.html" %}
{% include "supertree.html" %}
{% endif %}
{% include 'workflow.html' %}
{% include "bibliography.html" %}
{% include "warnings.html" %}