LICENSE
README.md
config.py
pyproject.toml
ai_research_os.egg-info/PKG-INFO
ai_research_os.egg-info/SOURCES.txt
ai_research_os.egg-info/dependency_links.txt
ai_research_os.egg-info/entry_points.txt
ai_research_os.egg-info/requires.txt
ai_research_os.egg-info/top_level.txt
cli/__init__.py
cli/__main__.py
cli/_registry.py
cli/_shared.py
cli/warp.py
cli/cmd/__init__.py
cli/cmd/analyze.py
cli/cmd/argue.py
cli/cmd/ask.py
cli/cmd/benchmark.py
cli/cmd/cache.py
cli/cmd/chat.py
cli/cmd/chat_tui.py
cli/cmd/citation_chain.py
cli/cmd/citations.py
cli/cmd/cite_backfill.py
cli/cmd/cite_fetch.py
cli/cmd/cite_graph.py
cli/cmd/cite_import.py
cli/cmd/cite_stats.py
cli/cmd/compare.py
cli/cmd/dashboard.py
cli/cmd/dedup.py
cli/cmd/dedup_semantic.py
cli/cmd/digest.py
cli/cmd/evolution.py
cli/cmd/evoskill.py
cli/cmd/experiment.py
cli/cmd/export.py
cli/cmd/friction.py
cli/cmd/gap.py
cli/cmd/hypothesize.py
cli/cmd/import_.py
cli/cmd/influence.py
cli/cmd/ingest.py
cli/cmd/insight.py
cli/cmd/journal.py
cli/cmd/kg.py
cli/cmd/lean.py
cli/cmd/list.py
cli/cmd/litreview.py
cli/cmd/merge.py
cli/cmd/narrative.py
cli/cmd/paper2code.py
cli/cmd/path.py
cli/cmd/pipeline.py
cli/cmd/postprocess.py
cli/cmd/question.py
cli/cmd/queue.py
cli/cmd/rag.py
cli/cmd/read_queue.py
cli/cmd/repl.py
cli/cmd/replicate.py
cli/cmd/research.py
cli/cmd/review.py
cli/cmd/roadmap.py
cli/cmd/route.py
cli/cmd/search.py
cli/cmd/session.py
cli/cmd/similar.py
cli/cmd/slides.py
cli/cmd/stats.py
cli/cmd/status.py
cli/cmd/story.py
cli/cmd/subscribe.py
cli/cmd/trend.py
cli/cmd/validate.py
cli/cmd/visual.py
completions/bash
completions/fish
completions/zsh
core/__init__.py
core/_constants.py
core/achievements.py
core/backup.py
core/basics.py
core/batch_optimizer.py
core/cache.py
core/code_indexer.py
core/ecosystem.py
core/exceptions.py
core/i18n.py
core/logging_utils.py
core/notifications.py
core/performance_guarantee.py
core/profiler.py
core/progress_tracker.py
core/rate_limiter.py
core/resource_monitor.py
core/retry.py
core/search_optimizer.py
core/setup_wizard.py
core/simple_cli.py
core/smart_cache.py
core/test_quick.py
core/user_helpers.py
core/value_quantifier.py
core/vector_store.py
core/watch_papers.py
core/watermarker.py
core/workflow.py
db/__init__.py
db/database.py
db/migrate.py
db/optimize.py
extable/__init__.py
extable/detector.py
extable/parser.py
extable/storage.py
kg/__init__.py
kg/integration.py
kg/manager.py
kg/queries.py
llm/__init__.py
llm/argument_builder.py
llm/benchmark.py
llm/chat.py
llm/citation_chain.py
llm/claude_cli.py
llm/client.py
llm/client_async.py
llm/constants.py
llm/cross_referencer.py
llm/dashboard.py
llm/evolution.py
llm/evolution_report.py
llm/experiment_tracker.py
llm/friction_tracker.py
llm/gap_analyzer.py
llm/gap_detector.py
llm/generate.py
llm/hypothesis_generator.py
llm/insight_cards.py
llm/insight_evolution.py
llm/journal.py
llm/lean_verifier.py
llm/litreview_analyzer.py
llm/paper_analyzer.py
llm/paper_comparison.py
llm/parse.py
llm/pipeline.py
llm/postprocess.py
llm/question_tracker.py
llm/question_validator.py
llm/replication_tracker.py
llm/research_chat.py
llm/research_narrative_tracker.py
llm/research_path.py
llm/research_session.py
llm/review_generator.py
llm/roadmap_generator.py
llm/semantic_router.py
llm/slides.py
llm/story_weaver.py
llm/subscription_monitor.py
llm/subscription_scorer.py
llm/text_utils.py
llm/tracker_base.py
llm/trend_analyzer.py
llm/warp_cli.py
llm/weekly_digest.py
notes/__init__.py
notes/cnote.py
notes/frontmatter.py
notes/keyword_tags.py
notes/mnote.py
notes/pnotes.py
parsers/__init__.py
parsers/arxiv.py
parsers/arxiv_search.py
parsers/crossref.py
parsers/input_detection.py
pdf/__init__.py
pdf/extract.py
pdf/extract_async.py
pdf/parser.py
pdf/visual.py
rankers/__init__.py
rankers/base.py
rankers/cosine.py
rankers/score.py
renderers/__init__.py
renderers/cnote.py
renderers/litreview.py
renderers/mnote.py
renderers/pnote.py
research_loop/__init__.py
research_loop/core.py
research_loop/evoskill_integration/__init__.py
research_loop/paper2code_integration/__init__.py
research_loop/rag_pipeline/__init__.py
scoring/__init__.py
scoring/momentum.py
sections/__init__.py
sections/segment.py
tests/test_ai_research_os.py
tests/test_argument_builder.py
tests/test_arun_research.py
tests/test_arxiv_search.py
tests/test_chat_tui_env.py
tests/test_citation_chain.py
tests/test_citation_grounded_analysis.py
tests/test_cli_citations.py
tests/test_cli_cite_graph.py
tests/test_cli_cite_import.py
tests/test_cli_dedup.py
tests/test_cli_import.py
tests/test_cli_ingest.py
tests/test_cli_lean.py
tests/test_cli_merge.py
tests/test_cli_question.py
tests/test_cli_read_queue.py
tests/test_cli_search.py
tests/test_cli_similar.py
tests/test_core_achievements.py
tests/test_core_backup.py
tests/test_core_basics.py
tests/test_core_ecosystem.py
tests/test_core_exceptions.py
tests/test_core_i18n.py
tests/test_core_logging_utils.py
tests/test_core_notifications.py
tests/test_core_profiler.py
tests/test_core_progress_tracker.py
tests/test_core_retry.py
tests/test_core_user_helpers.py
tests/test_core_value_quantifier.py
tests/test_core_watermarker.py
tests/test_core_workflow.py
tests/test_dashboard.py
tests/test_db.py
tests/test_db_embeddings.py
tests/test_db_optimize.py
tests/test_experiment_tracker.py
tests/test_extable.py
tests/test_gap_analyzer.py
tests/test_gap_detector.py
tests/test_hypothesis_generator.py
tests/test_insight_cards.py
tests/test_insight_evolution.py
tests/test_integration.py
tests/test_journal.py
tests/test_kg_incremental_rebuild.py
tests/test_kg_manager.py
tests/test_kg_queries.py
tests/test_litreview.py
tests/test_llm_argument_builder.py
tests/test_llm_chat.py
tests/test_llm_citation_chain.py
tests/test_llm_client.py
tests/test_llm_evolution.py
tests/test_llm_evolution_report.py
tests/test_llm_experiment_tracker.py
tests/test_llm_gap_analyzer.py
tests/test_llm_gap_detector.py
tests/test_llm_generate.py
tests/test_llm_hypothesis.py
tests/test_llm_hypothesis_generator.py
tests/test_llm_insight_cards.py
tests/test_llm_insight_evolution.py
tests/test_llm_journal.py
tests/test_llm_lean_verifier.py
tests/test_llm_paper_comparison.py
tests/test_llm_parse.py
tests/test_llm_question_validator.py
tests/test_llm_research_chat.py
tests/test_llm_research_path.py
tests/test_llm_research_session.py
tests/test_llm_review_generator.py
tests/test_llm_roadmap_generator.py
tests/test_llm_slides.py
tests/test_llm_story_weaver.py
tests/test_llm_text_utils.py
tests/test_llm_tracker_base.py
tests/test_llm_trend_analyzer.py
tests/test_llm_warp_cli.py
tests/test_llm_weekly_digest.py
tests/test_notes_cnote.py
tests/test_notes_tags.py
tests/test_optimizations.py
tests/test_paper_comparison.py
tests/test_parsers.py
tests/test_pdf_extract.py
tests/test_pdf_extract_full.py
tests/test_pdf_extract_optimized.py
tests/test_pdf_parser.py
tests/test_pipeline.py
tests/test_pnote_rendering.py
tests/test_profiler.py
tests/test_question_tracker.py
tests/test_question_validator.py
tests/test_rag_pipeline.py
tests/test_rankers.py
tests/test_rankers_extended.py
tests/test_rate_limiter.py
tests/test_renderers_extended.py
tests/test_replication_tracker.py
tests/test_research_chat.py
tests/test_research_loop.py
tests/test_research_narrative_tracker.py
tests/test_research_path.py
tests/test_resource_monitor.py
tests/test_retry.py
tests/test_review_generator.py
tests/test_roadmap_generator.py
tests/test_scoring_momentum.py
tests/test_search.py
tests/test_sections_segment.py
tests/test_semantic_router.py
tests/test_session.py
tests/test_simple_cli.py
tests/test_smart_cache.py
tests/test_story_weaver.py
tests/test_trend_analyzer.py
tests/test_trends_forecaster.py
tests/test_unit_ai.py
tests/test_unit_notes.py
tests/test_updaters.py
tests/test_user_helpers.py
tests/test_viz.py
tests/test_viz_d3_renderer.py
tests/test_vw_inspired_features.py
tests/test_weekly_digest.py
trends/__init__.py
trends/forecaster.py
updaters/__init__.py
updaters/radar.py
updaters/timeline.py
viz/__init__.py
viz/benchmark_viz.py
viz/d3_renderer.py
viz/pyvis_renderer.py
web/app.py