LICENSE.txt
NOTICE
README.md
pyproject.toml
src/pharmacon/__init__.py
src/pharmacon/main.py
src/pharmacon.egg-info/PKG-INFO
src/pharmacon.egg-info/SOURCES.txt
src/pharmacon.egg-info/dependency_links.txt
src/pharmacon.egg-info/entry_points.txt
src/pharmacon.egg-info/requires.txt
src/pharmacon.egg-info/top_level.txt
src/pharmacon/analyzer/__init__.py
src/pharmacon/analyzer/angles.py
src/pharmacon/analyzer/average_structure.py
src/pharmacon/analyzer/detector.py
src/pharmacon/analyzer/distances.py
src/pharmacon/analyzer/frame_logger.py
src/pharmacon/analyzer/interactions.py
src/pharmacon/analyzer/properties.py
src/pharmacon/analyzer/sequence.py
src/pharmacon/command_line/__init__.py
src/pharmacon/command_line/base.py
src/pharmacon/command_line/common_args.py
src/pharmacon/command_line/dispatcher.py
src/pharmacon/command_line/exceptions.py
src/pharmacon/command_line/formatter.py
src/pharmacon/command_line/registry.py
src/pharmacon/command_line/dump/__init__.py
src/pharmacon/command_line/dump/psa.py
src/pharmacon/command_line/dump/pta.py
src/pharmacon/command_line/export/__init__.py
src/pharmacon/command_line/export/psa.py
src/pharmacon/command_line/export/pta.py
src/pharmacon/command_line/merge/__init__.py
src/pharmacon/command_line/merge/results.py
src/pharmacon/command_line/plot/__init__.py
src/pharmacon/command_line/plot/pta.py
src/pharmacon/command_line/structure/__init__.py
src/pharmacon/command_line/structure/properties.py
src/pharmacon/command_line/structure/sequence.py
src/pharmacon/command_line/trajectory/__init__.py
src/pharmacon/command_line/trajectory/angles.py
src/pharmacon/command_line/trajectory/average_st.py
src/pharmacon/command_line/trajectory/distances.py
src/pharmacon/command_line/trajectory/hydrogen_bonds.py
src/pharmacon/command_line/trajectory/pca.py
src/pharmacon/command_line/trajectory/pl_interactions.py
src/pharmacon/command_line/trajectory/pp_interactions.py
src/pharmacon/command_line/trajectory/rmsd.py
src/pharmacon/command_line/trajectory/rmsf.py
src/pharmacon/constants/__init__.py
src/pharmacon/constants/colors.py
src/pharmacon/constants/environment.py
src/pharmacon/constants/formats.py
src/pharmacon/constants/smarts.py
src/pharmacon/constants/plots/__init__.py
src/pharmacon/constants/plots/_base.py
src/pharmacon/constants/plots/hbonds.py
src/pharmacon/constants/plots/pca.py
src/pharmacon/constants/plots/pli.py
src/pharmacon/constants/plots/ppi.py
src/pharmacon/constants/plots/rmsf.py
src/pharmacon/constants/plots/universal.py
src/pharmacon/fileio/__init__.py
src/pharmacon/fileio/base.py
src/pharmacon/fileio/psa.py
src/pharmacon/fileio/pta.py
src/pharmacon/logger/__init__.py
src/pharmacon/logger/file.py
src/pharmacon/logger/headers.py
src/pharmacon/logger/levels.py
src/pharmacon/logger/terminal.py
src/pharmacon/plotter/__init__.py
src/pharmacon/plotter/hbonds.py
src/pharmacon/plotter/interactions.py
src/pharmacon/plotter/universal.py
src/pharmacon/utils/__init__.py
src/pharmacon/utils/fingerprint.py
src/pharmacon/utils/identifiers.py
src/pharmacon/utils/ini.py
src/pharmacon/utils/mda.py
src/pharmacon/utils/pta_validation.py
src/pharmacon/utils/validation.py
src/pharmacon/utils/workspace.py
tests/test_angles.py
tests/test_average_structure.py
tests/test_detector.py
tests/test_dispatcher.py
tests/test_distances.py
tests/test_fileio_base.py
tests/test_fileio_psa.py
tests/test_fileio_pta.py
tests/test_fingerprint.py
tests/test_frame_logger.py
tests/test_hbonds_modes.py
tests/test_hbonds_plots.py
tests/test_identifiers.py
tests/test_ini.py
tests/test_interactions.py
tests/test_logger.py
tests/test_mda.py
tests/test_pca_dispatch_and_validation.py
tests/test_pli_cmap_interpolation.py
tests/test_plot_ini.py
tests/test_plot_ini_propagation.py
tests/test_plot_settings_effects.py
tests/test_plot_settings_unset.py
tests/test_plot_validation.py
tests/test_plotter_builders.py
tests/test_plotter_smoke.py
tests/test_plotter_utils.py
tests/test_ppi_heatmap_matrix.py
tests/test_ppi_validation.py
tests/test_properties.py
tests/test_pta_validation.py
tests/test_registry.py
tests/test_rmsf_fileio.py
tests/test_rmsf_merge.py
tests/test_rmsf_plot_settings.py
tests/test_rmsf_shading_colors.py
tests/test_rmsf_validation.py
tests/test_sequence.py
tests/test_settings_contract.py
tests/test_universal_units_ylabel.py
tests/test_universal_validation.py
tests/test_validation.py
tests/test_workspace.py