Dockerfile
Dockerfile.upgrade
MANIFEST.in
README.md
config_template.json
main_wrapper.py
pyproject.toml
requirements.txt
wrapper_result_merger.py
.claude/settings.json
.github/workflows/release.yml
input_lists/FDA_approved_ProductsActiveIngredientOnly_DupsRemovedCleanedUp.txt
input_lists/genes_no_syn.txt
skimgpt/__init__.py
skimgpt/classifier.py
skimgpt/cost_estimator.py
skimgpt/eval_JSON_results.py
skimgpt/htcondor_helper.py
skimgpt/main.py
skimgpt/prompt_library.py
skimgpt/pubmed_fetcher.py
skimgpt/relevance_chtc.py
skimgpt/relevance_helper.py
skimgpt/relevance_triton.py
skimgpt/retry.py
skimgpt/run.sh
skimgpt/scoring_guidelines.py
skimgpt/skim_and_km_api.py
skimgpt/triton_client.py
skimgpt/utils.py
skimgpt.egg-info/PKG-INFO
skimgpt.egg-info/SOURCES.txt
skimgpt.egg-info/dependency_links.txt
skimgpt.egg-info/entry_points.txt
skimgpt.egg-info/requires.txt
skimgpt.egg-info/top_level.txt
skimgpt/visualization/__init__.py
skimgpt/visualization/bayesian_ci.py
skimgpt/visualization/bayesian_ci_commandline.txt
skimgpt/visualization/hyp_stats.py
skimgpt/visualization/hyp_stats_commandline.txt
skimgpt/visualization/plot_hyp_stats.py
skimgpt/visualization/plot_hyp_stats_commandline.txt
skimgpt/visualization/plot_separate_runs.py
skimgpt/visualization/plot_separate_runs_commandline.txt
skimgpt/visualization/example_data/CVD_HormonevsStatins/km_hyp_stats.txt
skimgpt/visualization/example_data/CVD_HormonevsStatins/km_kept.txt
skimgpt/visualization/example_data/autism_GPvsVaccine/km_hyp_stats.txt
skimgpt/visualization/example_data/autism_GPvsVaccine/km_kept.txt
skimgpt/visualization/example_data/autism_microbiomeVsGP/km_hyp_stats.txt
skimgpt/visualization/example_data/autism_microbiomeVsGP/km_kept.txt
skimgpt/visualization/example_data/autism_microbiomevsVax/km_hyp_stats.txt
skimgpt/visualization/example_data/autism_microbiomevsVax/km_kept.txt
skimgpt/visualization/example_data/cervical_cancer/km_hyp_stats.txt
skimgpt/visualization/example_data/cervical_cancer/km_kept.txt
skimgpt/visualization/example_data/peptic_ulcer/km_hyp_stats.txt
skimgpt/visualization/example_data/peptic_ulcer/km_kept.txt
skimgpt/visualization/example_data/scrapie/km_hyp_stats.txt
skimgpt/visualization/example_data/scrapie/km_kept.txt