LICENSE
README.md
pyproject.toml
mist/__init__.py
mist/version.py
mist/app/__init__.py
mist/app/errors.py
mist/app/model.py
mist/app/dbs/__init__.py
mist/app/dbs/basedownloader.py
mist/app/dbs/bigsdbauthdownloader.py
mist/app/dbs/bigsdbdownloader.py
mist/app/dbs/cgmlstorgdownloader.py
mist/app/dbs/enterobasedownloader.py
mist/app/loggers/__init__.py
mist/app/loggers/logger.py
mist/app/query/__init__.py
mist/app/query/allelequeryminimap.py
mist/app/query/bestmatching.py
mist/app/query/profilequery.py
mist/app/query/seqholder.py
mist/app/utils/__init__.py
mist/app/utils/clustersplit.py
mist/app/utils/clusterutils.py
mist/app/utils/command.py
mist/app/utils/dbutils.py
mist/app/utils/dependencies.py
mist/app/utils/minimap2utils.py
mist/app/utils/nucmerutils.py
mist/app/utils/restutils.py
mist/app/utils/sequenceutils.py
mist/app/utils/testingutils.py
mist/resources/citation.txt
mist/resources/pubmlst/download_bigsdb.py
mist/resources/testdata/NEIS0140-fmt.fasta
mist/resources/testdata/NEIS0140-subset.fasta
mist/resources/testdata/NEIS0159-subset.fasta
mist/resources/testdata/neiss_query.fasta
mist/resources/testdata/neiss_query_no_hit.fasta
mist/resources/testdata/neiss_query_novel_allele.fasta
mist/resources/testdata/neiss_query_novel_allele_rc.fasta
mist/resources/testdata/output/GCF_000010485.1.json
mist/resources/testdata/output/GCF_000010485.1.tsv
mist/resources/testdata/output/GCF_025995355.1.json
mist/resources/testdata/output/GCF_025995355.1.tsv
mist/resources/testdata/output/GCF_026016785.1.json
mist/resources/testdata/output/GCF_026016785.1.tsv
mist/resources/testdata/output/GCF_036419615.1.json
mist/resources/testdata/output/GCF_036419615.1.tsv
mist/scripts/__init__.py
mist/scripts/mist_download.py
mist/scripts/mist_index.py
mist/scripts/mist_query.py
mist/scripts/mlst_phylogeny.py
mist/tests/__init__.py
mist/tests/test_index.py
mist/tests/test_phylogeny.py
mist/tests/test_query.py
mist/tests/dbs/__init__.py
mist/tests/dbs/test_downloaders.py
mist/tests/utils/__init__.py
mist/tests/utils/test_clustering_utils.py
mist/tests/utils/test_minimap2_utils.py
mist/tests/utils/test_sequence_utils.py
mist_typing.egg-info/PKG-INFO
mist_typing.egg-info/SOURCES.txt
mist_typing.egg-info/dependency_links.txt
mist_typing.egg-info/entry_points.txt
mist_typing.egg-info/requires.txt
mist_typing.egg-info/top_level.txt