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CHANGELOG.md
CONTRIBUTING.md
LICENSE
PR_181_COMPREHENSIVE_SUMMARY.md
README.md
pyproject.toml
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docs/conf.py
docs/index.rst
docs/read-me.md
docs/_static/cladetime_logo_dark_mode.png
docs/_static/cladetime_logo_light_mode.png
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docs/reference/clade.rst
docs/reference/cladetime.rst
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docs/reference/index.rst
docs/reference/sequence.rst
docs/reference/types.rst
requirements/requirements-dev.txt
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src/cladetime/__init__.py
src/cladetime/clade.py
src/cladetime/cladetime.py
src/cladetime/exceptions.py
src/cladetime/sequence.py
src/cladetime/tree.py
src/cladetime/types.py
src/cladetime.egg-info/PKG-INFO
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src/cladetime.egg-info/requires.txt
src/cladetime.egg-info/top_level.txt
src/cladetime/util/__init__.py
src/cladetime/util/config.py
src/cladetime/util/reference.py
src/cladetime/util/sequence.py
src/cladetime/util/session.py
src/cladetime/util/timing.py
tests/conftest.py
tests/data/README.md
tests/data/metadata.tsv.xz
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tests/data/test_metadata.tsv
tests/data/test_nextclade_dataset.zip
tests/data/test_sequences.fasta
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