Index

A

annotate() (in module gilda.api) (in module gilda.ner)

Annotation (class in gilda.ner)

D

dashes (in module gilda.process) db (gilda.term.Term attribute)

depluralize() (in module gilda.process) disambiguation (gilda.grounder.ScoredMatch attribute) dump_terms() (in module gilda.term)

E

end (gilda.ner.Annotation attribute)

entry_name (gilda.term.Term attribute)

G

generate_match() (in module gilda.scorer) get_ambiguities() (gilda.grounder.Grounder method) get_brat() (in module gilda.ner) get_capitalization_pattern() (in module gilda.process) get_curie() (gilda.term.Term method) get_grounder() (in module gilda.api) get_grounding_dict() (gilda.grounder.ScoredMatch method) get_groundings() (gilda.grounder.ScoredMatch method) (gilda.term.Term method) get_models() (gilda.grounder.Grounder method) (in module gilda.api) get_names() (gilda.grounder.Grounder method) (in module gilda.api) get_namespaces() (gilda.grounder.ScoredMatch method) (gilda.term.Term method) gilda.api module

gilda.grounder module gilda.ner module gilda.pandas_utils module gilda.process module gilda.scorer module gilda.term module ground() (gilda.grounder.Grounder method) (in module gilda.api) ground_best() (gilda.grounder.Grounder method) ground_df() (in module gilda.pandas_utils) ground_df_map() (in module gilda.pandas_utils) Grounder (class in gilda.grounder)

I

id (gilda.term.Term attribute)

L

load_entries_from_terms_file() (in module gilda.grounder)

load_terms_file() (in module gilda.grounder) lookup() (gilda.grounder.Grounder method)

M

make_grounder() (in module gilda.api) Match (class in gilda.scorer) match (gilda.grounder.ScoredMatch attribute) matches (gilda.ner.Annotation attribute) module gilda.api gilda.grounder gilda.ner gilda.pandas_utils gilda.process gilda.scorer gilda.term

N

norm_text (gilda.term.Term attribute)

normalize() (in module gilda.process)

O

organism (gilda.term.Term attribute)

P

print_summary() (gilda.grounder.Grounder method)

R

remove_dashes() (in module gilda.process) replace_dashes() (in module gilda.process) replace_greek_latin() (in module gilda.process)

replace_greek_spelled_out() (in module gilda.process) replace_greek_uni() (in module gilda.process) replace_unicode() (in module gilda.process) replace_whitespace() (in module gilda.process)

S

score (gilda.grounder.ScoredMatch attribute) score_string_match() (in module gilda.scorer) ScoredMatch (class in gilda.grounder) source (gilda.term.Term attribute) source_db (gilda.term.Term attribute)

source_id (gilda.term.Term attribute) split_preserve_tokens() (in module gilda.process) start (gilda.ner.Annotation attribute) status (gilda.term.Term attribute) subsumed_terms (gilda.grounder.ScoredMatch attribute) summary_str() (gilda.grounder.Grounder method)

T

Term (class in gilda.term) term (gilda.grounder.ScoredMatch attribute) text (gilda.ner.Annotation attribute) (gilda.term.Term attribute)

to_json() (gilda.term.Term method) to_list() (gilda.term.Term method)