# OS / Editor temp files
.DS_Store
*~
.ipynb_checkpoints/

# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
env/
venv/
.venv/
*.egg-info/
dist/
build/
.*cache/
# Optuna test
optuna_cellpin.py
.pytest_cache/
.ruff_cache/

# Local scratch / mock scripts
scratch_*.py

# Buck
buck-out/

# Node
/node_modules/

# Distribution / packaging
/dist/

# Data and results
*.h5ad
*.h5
*.csv
data/
results/
checkpoints/
cellpin_output/

# Models
*.pt
*.pth

# Logs
*.log
wandb/
.coverage*

# Docs
/docs/generated/
/docs/_build/

# Misc
view_result.ipynb
*.pdf

# Ignore experiment folder 
experiments/

#Claude
.claude/
CLAUDE.md 


