Metadata-Version: 2.4
Name: napari-nucleation-analyzer
Version: 1.0.1
Summary: A tool to count the number of motor proteins between centrosomes over time.
Author-email: Clément Benedetti <clement.benedetti@mri.cnrs.fr>
License: 
        The MIT License (MIT)
        
        Copyright (c) 2025 Volker Baecker
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in
        all copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
        THE SOFTWARE.
        
Classifier: Development Status :: 3 - Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Topic :: Scientific/Engineering :: Image Processing
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: scikit-image
Requires-Dist: set-calibration
Requires-Dist: scipy
Requires-Dist: trackpy
Requires-Dist: pandas
Requires-Dist: xarray
Provides-Extra: all
Requires-Dist: napari[all]; extra == "all"
Dynamic: license-file

# napari-nucleation-analyzer

![GitHub License](https://img.shields.io/github/license/MontpellierRessourcesImagerie/napari-nucleation-analyzer)
![Python Version](https://img.shields.io/badge/Python-3.10|3.11|3.12-blue?logo=python)
![Unit tests](https://img.shields.io/github/actions/workflow/status/MontpellierRessourcesImagerie/napari-nucleation-analyzer/test_and_deploy.yml?logo=pytest&label=tests)

This Napari plugin allows you to:
- Detect pairs of centrioles and track them over time to form centrosomes.
- Build arcs of desired radius and angle aligned with the vector pointing towards the 
  other centriole of the pair.
- Build kymographs of these arcs.
- Find spots on the kymographs.
- Produce a CSV file containing a column per centrosome and a line per time point 
  giving the number of spots at each T.

This README is very short, for further information, refer yourself to the [documentation](https://montpellierressourcesimagerie.github.io/napari-nucleation-analyzer/index.html).

If you run in any trouble, you can [❗open a ticket](https://github.com/MontpellierRessourcesImagerie/napari-nucleation-analyzer/issues).
