LICENSE
README.md
README_PACKAGE.md
pyproject.toml
tests/test_agent_core.py
tests/test_agent_core_incremental.py
tests/test_agent_core_read_figure.py
tests/test_build_crossreactivity.py
tests/test_build_pool_evidence.py
tests/test_build_pools.py
tests/test_candidate_funnel.py
tests/test_class2_paired_allele.py
tests/test_class_ii_epitope_anchor.py
tests/test_class_ii_minting_gap.py
tests/test_cli_subscription.py
tests/test_cohort_kind.py
tests/test_epitope_canonicalize.py
tests/test_epitope_linkage_guard.py
tests/test_evidence_anchor.py
tests/test_evidence_grain_b1.py
tests/test_evidence_subset_class.py
tests/test_fb_model.py
tests/test_fb_panels.py
tests/test_fb_reader.py
tests/test_fb_render.py
tests/test_fb_runner.py
tests/test_fb_score.py
tests/test_fb_smoke.py
tests/test_fb_truth_loader.py
tests/test_fb_vector.py
tests/test_field_guidance.py
tests/test_finalize_class_ii_gate.py
tests/test_guidance.py
tests/test_magnitude_nudge.py
tests/test_minimal_epitope_grain.py
tests/test_mutation_specific.py
tests/test_neoantigen_mutation.py
tests/test_outcome_linkage.py
tests/test_peptide_count_guard.py
tests/test_pool_reconciliation.py
tests/test_positional_columns.py
tests/test_pr_compare_qc.py
tests/test_prompt_render.py
tests/test_read_docx.py
tests/test_read_figure_tool.py
tests/test_read_pdf_paging.py
tests/test_read_table_filter.py
tests/test_read_table_oversized_underline.py
tests/test_recall_guards.py
tests/test_safety_grade_guard.py
tests/test_scale_extract_one.py
tests/test_schema_digest.py
tests/test_screening_readout.py
tests/test_survey_sources.py
tests/test_table_map.py
tests/test_table_to_entities.py
tests/test_trial_context.py
tests/test_vaccine_delivery.py
vaxtract/__init__.py
vaxtract/agent_core.py
vaxtract/cli.py
vaxtract/extraction_agent.py
vaxtract/layer2_prompt_deltas.md
vaxtract/prompt_render.py
vaxtract/schema.py
vaxtract/schema_digest.py
vaxtract/table_map.py
vaxtract/vocab.py
vaxtract.egg-info/PKG-INFO
vaxtract.egg-info/SOURCES.txt
vaxtract.egg-info/dependency_links.txt
vaxtract.egg-info/entry_points.txt
vaxtract.egg-info/requires.txt
vaxtract.egg-info/top_level.txt
vaxtract/figure_benchmark/RESULTS.md
vaxtract/figure_benchmark/__init__.py
vaxtract/figure_benchmark/_probe_pages.py
vaxtract/figure_benchmark/model.py
vaxtract/figure_benchmark/numeric_reader.py
vaxtract/figure_benchmark/panels.py
vaxtract/figure_benchmark/render_panel.py
vaxtract/figure_benchmark/run_benchmark.py
vaxtract/figure_benchmark/score_numeric.py
vaxtract/figure_benchmark/truth_loader.py
vaxtract/figure_benchmark/vector_extract.py