numpy>=1.22
scipy>=1.7
h5py>=3.8
anndata>=0.8
stancounts>=0.3
stangene>=0.5

[agent]
openai-agents<1,>=0.22
deepseek-harness-sdk>=0.1.2a3
mcp>=1.27
PyYAML>=6
uvicorn>=0.30
anyio>=4.0

[claude]
claude-agent-sdk>=0.2.152
anyio>=4.0

[llm]
deepseek-harness-sdk>=0.1.2a3
mcp>=1.27
PyYAML>=6
uvicorn>=0.30
anyio>=4.0

[openai]
openai-agents<1,>=0.22
anyio>=4.0

[probe]
scanpy>=1.10
harmonypy<0.3,>=0.0.9
scikit-learn>=1.1
leidenalg>=0.10

[test]
pytest>=7.0
