LICENSE.md
MANIFEST.in
README.md
pyproject.toml
setup.py
./mbo_utilities/__init__.py
./mbo_utilities/_cellpose_model.py
./mbo_utilities/_shortcut.py
./mbo_utilities/_sysmem.py
./mbo_utilities/_writers.py
./mbo_utilities/cli.py
./mbo_utilities/env_cache.py
./mbo_utilities/file_io.py
./mbo_utilities/gpu.py
./mbo_utilities/install.py
./mbo_utilities/lazy_array.py
./mbo_utilities/log.py
./mbo_utilities/pipeline_registry.py
./mbo_utilities/preferences.py
./mbo_utilities/reader.py
./mbo_utilities/squeeze.py
./mbo_utilities/writer.py
./mbo_utilities/analysis/__init__.py
./mbo_utilities/analysis/phasecorr.py
./mbo_utilities/analysis/scanphase.py
./mbo_utilities/arrays/__init__.py
./mbo_utilities/arrays/_base.py
./mbo_utilities/arrays/_channel_view.py
./mbo_utilities/arrays/_phasecorr_view.py
./mbo_utilities/arrays/_registration.py
./mbo_utilities/arrays/bin.py
./mbo_utilities/arrays/h5.py
./mbo_utilities/arrays/mp4.py
./mbo_utilities/arrays/numpy.py
./mbo_utilities/arrays/suite2p.py
./mbo_utilities/arrays/tiff.py
./mbo_utilities/arrays/zarr.py
./mbo_utilities/arrays/features/__init__.py
./mbo_utilities/arrays/features/_base.py
./mbo_utilities/arrays/features/_chunks.py
./mbo_utilities/arrays/features/_dim_labels.py
./mbo_utilities/arrays/features/_dim_spec.py
./mbo_utilities/arrays/features/_dim_tags.py
./mbo_utilities/arrays/features/_phase_correction.py
./mbo_utilities/arrays/features/_pyramid.py
./mbo_utilities/arrays/features/_roi.py
./mbo_utilities/arrays/features/_segmentation.py
./mbo_utilities/arrays/features/_slicing.py
./mbo_utilities/arrays/features/_stats.py
./mbo_utilities/arrays/features/_summary_stats.py
./mbo_utilities/arrays/isoview/__init__.py
./mbo_utilities/arrays/isoview/array.py
./mbo_utilities/arrays/isoview/consolidate.py
./mbo_utilities/assets/app_settings/icon.ico
./mbo_utilities/assets/app_settings/icon.png
./mbo_utilities/assets/docs/file_formats.md
./mbo_utilities/assets/docs/gui_quickstart.md
./mbo_utilities/assets/fonts/Akronim-Regular.ttf
./mbo_utilities/assets/fonts/DroidSans.ttf
./mbo_utilities/assets/fonts/Font_Awesome_6_Free-Solid-900.otf
./mbo_utilities/assets/fonts/Inconsolata-Medium.ttf
./mbo_utilities/assets/fonts/SourceCodePro-Regular.ttf
./mbo_utilities/assets/fonts/fontawesome-webfont.ttf
./mbo_utilities/assets/fonts/JetBrainsMono/JetBrainsMonoNerdFont-Bold.ttf
./mbo_utilities/assets/fonts/JetBrainsMono/OFL.txt
./mbo_utilities/assets/fonts/JetBrainsMono/README.md
./mbo_utilities/assets/fonts/Roboto/LICENSE.txt
./mbo_utilities/assets/fonts/Roboto/Roboto-Bold.ttf
./mbo_utilities/assets/fonts/Roboto/Roboto-BoldItalic.ttf
./mbo_utilities/assets/fonts/Roboto/Roboto-Regular.ttf
./mbo_utilities/assets/fonts/Roboto/Roboto-RegularItalic.ttf
./mbo_utilities/assets/notebooks/lsp_user_guide.ipynb
./mbo_utilities/assets/notebooks/mbo_user_guide.ipynb
./mbo_utilities/assets/static/icon_caiman_python.svg
./mbo_utilities/assets/static/icon_mbo_home.png
./mbo_utilities/assets/static/icon_mbo_home.svg
./mbo_utilities/assets/static/icon_suite2p.svg
./mbo_utilities/assets/static/lbm_mat_favicon.svg
./mbo_utilities/assets/static/logo_utilities.png
./mbo_utilities/assets/static/mbo.png
./mbo_utilities/assets/static/mbo_home_icon.png
./mbo_utilities/assets/static/mbo_hub_saph.svg
./mbo_utilities/assets/static/mbo_icon.ico
./mbo_utilities/assets/static/mbo_icon_dark.ico
./mbo_utilities/assets/static/utilities.png
./mbo_utilities/gui/__init__.py
./mbo_utilities/gui/_availability.py
./mbo_utilities/gui/_colormaps.py
./mbo_utilities/gui/_dialogs.py
./mbo_utilities/gui/_gpu_cache.py
./mbo_utilities/gui/_help_viewer.py
./mbo_utilities/gui/_imgui_helpers.py
./mbo_utilities/gui/_isoview_crop_state.py
./mbo_utilities/gui/_isoview_orient_state.py
./mbo_utilities/gui/_keyboard.py
./mbo_utilities/gui/_metadata.py
./mbo_utilities/gui/_metadata_editor.py
./mbo_utilities/gui/_options_popup.py
./mbo_utilities/gui/_popups.py
./mbo_utilities/gui/_save_as.py
./mbo_utilities/gui/_selection_ui.py
./mbo_utilities/gui/_setup.py
./mbo_utilities/gui/_stats.py
./mbo_utilities/gui/_worker.py
./mbo_utilities/gui/run_gui.py
./mbo_utilities/gui/tasks.py
./mbo_utilities/gui/panels/__init__.py
./mbo_utilities/gui/panels/debug_log.py
./mbo_utilities/gui/viewers/__init__.py
./mbo_utilities/gui/viewers/pollen_calibration.py
./mbo_utilities/gui/viewers/time_series.py
./mbo_utilities/gui/widgets/__init__.py
./mbo_utilities/gui/widgets/_base.py
./mbo_utilities/gui/widgets/_orient.py
./mbo_utilities/gui/widgets/diagnostics.py
./mbo_utilities/gui/widgets/file_dialog.py
./mbo_utilities/gui/widgets/frame_averaging.py
./mbo_utilities/gui/widgets/grid_search.py
./mbo_utilities/gui/widgets/gui_logger.py
./mbo_utilities/gui/widgets/isoview_align_views.py
./mbo_utilities/gui/widgets/isoview_crop.py
./mbo_utilities/gui/widgets/isoview_deadpixel.py
./mbo_utilities/gui/widgets/isoview_segment.py
./mbo_utilities/gui/widgets/menu_bar.py
./mbo_utilities/gui/widgets/preview_data.py
./mbo_utilities/gui/widgets/process_manager.py
./mbo_utilities/gui/widgets/progress_bar.py
./mbo_utilities/gui/widgets/projections.py
./mbo_utilities/gui/widgets/raster_scan.py
./mbo_utilities/gui/widgets/simple_selector.py
./mbo_utilities/gui/widgets/summary_image.py
./mbo_utilities/gui/widgets/tile_grid.py
./mbo_utilities/gui/widgets/window_functions.py
./mbo_utilities/gui/widgets/pipelines/__init__.py
./mbo_utilities/gui/widgets/pipelines/_base.py
./mbo_utilities/gui/widgets/pipelines/_s2p_schema.py
./mbo_utilities/gui/widgets/pipelines/isoview.py
./mbo_utilities/gui/widgets/pipelines/settings.py
./mbo_utilities/gui/widgets/pipelines/suite2p.py
./mbo_utilities/hpc/__init__.py
./mbo_utilities/hpc/check.py
./mbo_utilities/hpc/cli.py
./mbo_utilities/hpc/cluster.py
./mbo_utilities/hpc/config.py
./mbo_utilities/hpc/history.py
./mbo_utilities/hpc/logs.py
./mbo_utilities/hpc/pipeline.py
./mbo_utilities/hpc/slurm.py
./mbo_utilities/hpc/submit.py
./mbo_utilities/metadata/__init__.py
./mbo_utilities/metadata/_filename_parser.py
./mbo_utilities/metadata/base.py
./mbo_utilities/metadata/io.py
./mbo_utilities/metadata/output.py
./mbo_utilities/metadata/params.py
./mbo_utilities/metadata/scanimage.py
./pollen/__init__.py
./pollen/_pollen_analysis.py
./pollen/pollen_calibration_mbo.py
demos/lsp_user_guide.ipynb
demos/mbo_user_guide.ipynb
mbo_utilities/__init__.py
mbo_utilities/_cellpose_model.py
mbo_utilities/_shortcut.py
mbo_utilities/_sysmem.py
mbo_utilities/_writers.py
mbo_utilities/cli.py
mbo_utilities/env_cache.py
mbo_utilities/file_io.py
mbo_utilities/gpu.py
mbo_utilities/install.py
mbo_utilities/lazy_array.py
mbo_utilities/log.py
mbo_utilities/pipeline_registry.py
mbo_utilities/preferences.py
mbo_utilities/reader.py
mbo_utilities/squeeze.py
mbo_utilities/writer.py
mbo_utilities.egg-info/PKG-INFO
mbo_utilities.egg-info/SOURCES.txt
mbo_utilities.egg-info/dependency_links.txt
mbo_utilities.egg-info/entry_points.txt
mbo_utilities.egg-info/requires.txt
mbo_utilities.egg-info/top_level.txt
mbo_utilities/analysis/__init__.py
mbo_utilities/analysis/phasecorr.py
mbo_utilities/analysis/scanphase.py
mbo_utilities/arrays/__init__.py
mbo_utilities/arrays/_base.py
mbo_utilities/arrays/_channel_view.py
mbo_utilities/arrays/_phasecorr_view.py
mbo_utilities/arrays/_registration.py
mbo_utilities/arrays/bin.py
mbo_utilities/arrays/h5.py
mbo_utilities/arrays/mp4.py
mbo_utilities/arrays/numpy.py
mbo_utilities/arrays/suite2p.py
mbo_utilities/arrays/tiff.py
mbo_utilities/arrays/zarr.py
mbo_utilities/arrays/features/__init__.py
mbo_utilities/arrays/features/_base.py
mbo_utilities/arrays/features/_chunks.py
mbo_utilities/arrays/features/_dim_labels.py
mbo_utilities/arrays/features/_dim_spec.py
mbo_utilities/arrays/features/_dim_tags.py
mbo_utilities/arrays/features/_phase_correction.py
mbo_utilities/arrays/features/_pyramid.py
mbo_utilities/arrays/features/_roi.py
mbo_utilities/arrays/features/_segmentation.py
mbo_utilities/arrays/features/_slicing.py
mbo_utilities/arrays/features/_stats.py
mbo_utilities/arrays/features/_summary_stats.py
mbo_utilities/arrays/isoview/__init__.py
mbo_utilities/arrays/isoview/array.py
mbo_utilities/arrays/isoview/consolidate.py
mbo_utilities/assets/app_settings/icon.ico
mbo_utilities/assets/app_settings/icon.png
mbo_utilities/assets/docs/file_formats.md
mbo_utilities/assets/docs/gui_quickstart.md
mbo_utilities/assets/fonts/Akronim-Regular.ttf
mbo_utilities/assets/fonts/DroidSans.ttf
mbo_utilities/assets/fonts/Font_Awesome_6_Free-Solid-900.otf
mbo_utilities/assets/fonts/Inconsolata-Medium.ttf
mbo_utilities/assets/fonts/SourceCodePro-Regular.ttf
mbo_utilities/assets/fonts/fontawesome-webfont.ttf
mbo_utilities/assets/fonts/JetBrainsMono/JetBrainsMonoNerdFont-Bold.ttf
mbo_utilities/assets/fonts/JetBrainsMono/OFL.txt
mbo_utilities/assets/fonts/JetBrainsMono/README.md
mbo_utilities/assets/fonts/Roboto/LICENSE.txt
mbo_utilities/assets/fonts/Roboto/Roboto-Bold.ttf
mbo_utilities/assets/fonts/Roboto/Roboto-BoldItalic.ttf
mbo_utilities/assets/fonts/Roboto/Roboto-Regular.ttf
mbo_utilities/assets/fonts/Roboto/Roboto-RegularItalic.ttf
mbo_utilities/assets/notebooks/lsp_user_guide.ipynb
mbo_utilities/assets/notebooks/mbo_user_guide.ipynb
mbo_utilities/assets/static/icon_caiman_python.svg
mbo_utilities/assets/static/icon_mbo_home.png
mbo_utilities/assets/static/icon_mbo_home.svg
mbo_utilities/assets/static/icon_suite2p.svg
mbo_utilities/assets/static/lbm_mat_favicon.svg
mbo_utilities/assets/static/logo_utilities.png
mbo_utilities/assets/static/mbo.png
mbo_utilities/assets/static/mbo_home_icon.png
mbo_utilities/assets/static/mbo_hub_saph.svg
mbo_utilities/assets/static/mbo_icon.ico
mbo_utilities/assets/static/mbo_icon_dark.ico
mbo_utilities/assets/static/utilities.png
mbo_utilities/gui/__init__.py
mbo_utilities/gui/_availability.py
mbo_utilities/gui/_colormaps.py
mbo_utilities/gui/_dialogs.py
mbo_utilities/gui/_gpu_cache.py
mbo_utilities/gui/_help_viewer.py
mbo_utilities/gui/_imgui_helpers.py
mbo_utilities/gui/_isoview_crop_state.py
mbo_utilities/gui/_isoview_orient_state.py
mbo_utilities/gui/_keyboard.py
mbo_utilities/gui/_metadata.py
mbo_utilities/gui/_metadata_editor.py
mbo_utilities/gui/_options_popup.py
mbo_utilities/gui/_popups.py
mbo_utilities/gui/_save_as.py
mbo_utilities/gui/_selection_ui.py
mbo_utilities/gui/_setup.py
mbo_utilities/gui/_stats.py
mbo_utilities/gui/_worker.py
mbo_utilities/gui/run_gui.py
mbo_utilities/gui/tasks.py
mbo_utilities/gui/panels/__init__.py
mbo_utilities/gui/panels/debug_log.py
mbo_utilities/gui/viewers/__init__.py
mbo_utilities/gui/viewers/pollen_calibration.py
mbo_utilities/gui/viewers/time_series.py
mbo_utilities/gui/widgets/__init__.py
mbo_utilities/gui/widgets/_base.py
mbo_utilities/gui/widgets/_orient.py
mbo_utilities/gui/widgets/diagnostics.py
mbo_utilities/gui/widgets/file_dialog.py
mbo_utilities/gui/widgets/frame_averaging.py
mbo_utilities/gui/widgets/grid_search.py
mbo_utilities/gui/widgets/gui_logger.py
mbo_utilities/gui/widgets/isoview_align_views.py
mbo_utilities/gui/widgets/isoview_crop.py
mbo_utilities/gui/widgets/isoview_deadpixel.py
mbo_utilities/gui/widgets/isoview_segment.py
mbo_utilities/gui/widgets/menu_bar.py
mbo_utilities/gui/widgets/preview_data.py
mbo_utilities/gui/widgets/process_manager.py
mbo_utilities/gui/widgets/progress_bar.py
mbo_utilities/gui/widgets/projections.py
mbo_utilities/gui/widgets/raster_scan.py
mbo_utilities/gui/widgets/simple_selector.py
mbo_utilities/gui/widgets/summary_image.py
mbo_utilities/gui/widgets/tile_grid.py
mbo_utilities/gui/widgets/window_functions.py
mbo_utilities/gui/widgets/pipelines/__init__.py
mbo_utilities/gui/widgets/pipelines/_base.py
mbo_utilities/gui/widgets/pipelines/_s2p_schema.py
mbo_utilities/gui/widgets/pipelines/isoview.py
mbo_utilities/gui/widgets/pipelines/settings.py
mbo_utilities/gui/widgets/pipelines/suite2p.py
mbo_utilities/hpc/__init__.py
mbo_utilities/hpc/check.py
mbo_utilities/hpc/cli.py
mbo_utilities/hpc/cluster.py
mbo_utilities/hpc/config.py
mbo_utilities/hpc/history.py
mbo_utilities/hpc/logs.py
mbo_utilities/hpc/pipeline.py
mbo_utilities/hpc/slurm.py
mbo_utilities/hpc/submit.py
mbo_utilities/metadata/__init__.py
mbo_utilities/metadata/_filename_parser.py
mbo_utilities/metadata/base.py
mbo_utilities/metadata/io.py
mbo_utilities/metadata/output.py
mbo_utilities/metadata/params.py
mbo_utilities/metadata/scanimage.py
pollen/__init__.py
pollen/_pollen_analysis.py
pollen/pollen_calibration_mbo.py
tests/test_arrays.py
tests/test_lazy_array.py
tests/test_lazyarray_contract.py
tests/test_metadata.py
tests/test_metadata_fmt.py
tests/test_metadata_module.py
tests/test_natural_rank.py
tests/test_numpy_dims.py
tests/test_phasecorr_view.py
tests/test_roundtrip.py
tests/test_shape5d.py
tests/test_squeeze.py
tests/test_summary_stats.py
tests/test_to_video.py
tests/test_viewer_pipeline.py
tests/test_zarr_chunking.py