Metadata-Version: 2.4
Name: stratiphy
Version: 0.3.2
Summary: Phenotype-driven clustering of cohorts for discovery of novel disease subgroups
Author-email: Daniel Danis <daniel.gordon.danis@protonmail.com>, Peter N Robinson <peter.robinson@bih-charite.de>
License: BSD 3-Clause License
        
        Copyright (c) 2026 Daniel Danis
        All rights reserved.
        
        Redistribution and use in source and binary forms, with or without
        modification, are permitted provided that the following conditions are met:
        
        1. Redistributions of source code must retain the above copyright notice, this
           list of conditions and the following disclaimer.
        
        2. Redistributions in binary form must reproduce the above copyright notice,
           this list of conditions and the following disclaimer in the documentation
           and/or other materials provided with the distribution.
        
        3. Neither the name of the copyright holder nor the names of its
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        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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Project-URL: homepage, https://github.com/P2GX/stratiphy
Project-URL: repository, https://github.com/P2GX/stratiphy.git
Project-URL: documentation, https://P2GX.github.io/stratiphy/stable
Project-URL: bugtracker, https://github.com/P2GX/stratiphy/issues
Keywords: clustering,human phenotype ontology,phenopackets
Classifier: Development Status :: 3 - Alpha
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: hpo-toolkit>=0.8.1
Requires-Dist: numpy>=1.10
Requires-Dist: pandas<3.0.0,>=2.0
Requires-Dist: phenopackets~=2.0.2
Requires-Dist: protobuf<8.0.0,>=3.20.2
Requires-Dist: scikit-learn<2.0.0,>=1.0.0
Requires-Dist: scipy<2.0,>=1.1.0
Requires-Dist: statsmodels<1.0.0,>=0.14.6
Requires-Dist: tqdm<5.0,>=4.0
Provides-Extra: test
Requires-Dist: pytest<8.0.0,>=7.0.0; extra == "test"
Requires-Dist: ruff==0.12.2; extra == "test"
Provides-Extra: docs
Requires-Dist: mkdocs>=1.6.1; extra == "docs"
Requires-Dist: mkdocs-material>=9.7.0; extra == "docs"
Requires-Dist: mkdocstrings[python]>=0.30.1; extra == "docs"
Requires-Dist: mkdocs-api-autonav>=0.4.0; extra == "docs"
Dynamic: license-file

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# Stratiphy

A Python package for phenotype-driven clustering of cohorts for discovery of novel disease subgroups.

See our documentation for the [setup](https://p2gx.github.io/stratiphy/stable/setup.html) instructions,
a [tutorial](https://p2gx.github.io/stratiphy/stable/tutorial.html) with an end-to-end genotype-phenotype association analysis,
and a comprehensive [user guide](https://p2gx.github.io/stratiphy/stable/user-guide/index.html) with everything else.

The documentation comes in two flavors:

- [Stable documentation](https://p2gx.github.io/stratiphy/stable/) (last release on `main` branch)
- [Latest documentation](https://p2gx.github.io/stratiphy/latest) (bleeding edge, latest commit on `development` branch)
