[console_scripts]
add_cipos_to_vcf = ugbio_cnv.add_cipos:main
analyze_cnv_breakpoint_reads = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main_analyze_breakpoints
annotate_FREEC_segments = ugbio_cnv.annotate_FREEC_segments:main
annotate_vcf_with_regions = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main_annotate_regions
bicseq2_post_processing = ugbio_cnv.bicseq2_post_processing:main
combine_cnmops_cnvpytor_cnv_calls = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main
combine_cnv_vcfs = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main_concat
plot_FREEC_neutral_AF = ugbio_cnv.plot_FREEC_neutral_AF:main
plot_cnv_results = ugbio_cnv.plot_cnv_results:main
process_cnvs = ugbio_cnv.process_cnvs:main
run_cnvpytor = ugbio_cnv.run_cnvpytor:main
run_jalign = ugbio_cnv.run_jalign:main
run_tests = pytest:main
