.coveragerc
.flake8
.gitignore
.pre-commit-config.yaml
LICENSE
README.rst
meta.yaml
pyproject.toml
pytest.ini
.github/dependabot.yml
.github/workflows/deploy_PyPi.yml
.github/workflows/deploy_anaconda.yml
.github/workflows/deploy_coverage.yml
.github/workflows/deploy_documentation.yml
RosettaX/__init__.py
RosettaX/__main__.py
RosettaX/_version.py
RosettaX.egg-info/PKG-INFO
RosettaX.egg-info/SOURCES.txt
RosettaX.egg-info/dependency_links.txt
RosettaX.egg-info/entry_points.txt
RosettaX.egg-info/requires.txt
RosettaX.egg-info/top_level.txt
RosettaX/application/__init__.py
RosettaX/application/callbacks.py
RosettaX/application/layout.py
RosettaX/application/main.py
RosettaX/application/pages.py
RosettaX/application/routes.py
RosettaX/assets/logo_dark.svg
RosettaX/assets/logo_light.svg
RosettaX/calibrations/fluorescence/calibration.json
RosettaX/calibrations/fluorescence/test.json
RosettaX/calibrations/scattering/calibration.json
RosettaX/data/20140515_Stratedigm_S1313EX_Rosetta.fcs
RosettaX/data/FITC MESF calibration beads_0.fcs
RosettaX/data/__init__.py
RosettaX/data/sample.fcs
RosettaX/data/sample_0.fcs
RosettaX/data/sample_0_calibrated_9186ccf279cd4d0baab9de90211d5358.fcs
RosettaX/data/sample_1.fcs
RosettaX/pages/__init__.py
RosettaX/pages/p00_sidebar/__init__.py
RosettaX/pages/p00_sidebar/ids.py
RosettaX/pages/p00_sidebar/main.py
RosettaX/pages/p01_home/__init__.py
RosettaX/pages/p01_home/main.py
RosettaX/pages/p02_fluorescence/__init__.py
RosettaX/pages/p02_fluorescence/backend.py
RosettaX/pages/p02_fluorescence/ids.py
RosettaX/pages/p02_fluorescence/main.py
RosettaX/pages/p02_fluorescence/state.py
RosettaX/pages/p02_fluorescence/sections/__init__.py
RosettaX/pages/p02_fluorescence/sections/s00_header/__init__.py
RosettaX/pages/p02_fluorescence/sections/s00_header/callbacks.py
RosettaX/pages/p02_fluorescence/sections/s00_header/layout.py
RosettaX/pages/p02_fluorescence/sections/s00_header/main.py
RosettaX/pages/p02_fluorescence/sections/s01_upload/__init__.py
RosettaX/pages/p02_fluorescence/sections/s01_upload/callbacks.py
RosettaX/pages/p02_fluorescence/sections/s01_upload/layout.py
RosettaX/pages/p02_fluorescence/sections/s01_upload/main.py
RosettaX/pages/p02_fluorescence/sections/s02_peaks/__init__.py
RosettaX/pages/p02_fluorescence/sections/s02_peaks/callbacks.py
RosettaX/pages/p02_fluorescence/sections/s02_peaks/layout.py
RosettaX/pages/p02_fluorescence/sections/s02_peaks/main.py
RosettaX/pages/p02_fluorescence/sections/s03_table/__init__.py
RosettaX/pages/p02_fluorescence/sections/s03_table/callbacks.py
RosettaX/pages/p02_fluorescence/sections/s03_table/layout.py
RosettaX/pages/p02_fluorescence/sections/s03_table/main.py
RosettaX/pages/p02_fluorescence/sections/s04_calibration/__init__.py
RosettaX/pages/p02_fluorescence/sections/s04_calibration/callbacks.py
RosettaX/pages/p02_fluorescence/sections/s04_calibration/layout.py
RosettaX/pages/p02_fluorescence/sections/s04_calibration/main.py
RosettaX/pages/p02_fluorescence/sections/s05_save/__init__.py
RosettaX/pages/p02_fluorescence/sections/s05_save/callbacks.py
RosettaX/pages/p02_fluorescence/sections/s05_save/layout.py
RosettaX/pages/p02_fluorescence/sections/s05_save/main.py
RosettaX/pages/p03_scattering/__init__.py
RosettaX/pages/p03_scattering/backend.py
RosettaX/pages/p03_scattering/ids.py
RosettaX/pages/p03_scattering/main.py
RosettaX/pages/p03_scattering/state.py
RosettaX/pages/p03_scattering/sections/__init__.py
RosettaX/pages/p03_scattering/sections/s00_header.py
RosettaX/pages/p03_scattering/sections/s01_upload.py
RosettaX/pages/p03_scattering/sections/s02_peaks.py
RosettaX/pages/p03_scattering/sections/s03_model.py
RosettaX/pages/p03_scattering/sections/s04_table.py
RosettaX/pages/p03_scattering/sections/s05_calibration.py
RosettaX/pages/p03_scattering/sections/s06_save.py
RosettaX/pages/p04_calibrate/__init__.py
RosettaX/pages/p04_calibrate/ids.py
RosettaX/pages/p04_calibrate/main.py
RosettaX/pages/p04_calibrate/state.py
RosettaX/pages/p04_calibrate/sections/__init__.py
RosettaX/pages/p04_calibrate/sections/s01_header.py
RosettaX/pages/p04_calibrate/sections/s02_calibration_picker/__init__.py
RosettaX/pages/p04_calibrate/sections/s02_calibration_picker/callbacks.py
RosettaX/pages/p04_calibrate/sections/s02_calibration_picker/layout.py
RosettaX/pages/p04_calibrate/sections/s02_calibration_picker/main.py
RosettaX/pages/p04_calibrate/sections/s02_calibration_picker/services.py
RosettaX/pages/p04_calibrate/sections/s03_file_picker/__init__.py
RosettaX/pages/p04_calibrate/sections/s03_file_picker/callbacks.py
RosettaX/pages/p04_calibrate/sections/s03_file_picker/layout.py
RosettaX/pages/p04_calibrate/sections/s03_file_picker/main.py
RosettaX/pages/p04_calibrate/sections/s03_file_picker/services.py
RosettaX/pages/p04_calibrate/sections/s04_apply/__init__.py
RosettaX/pages/p04_calibrate/sections/s04_apply/callbacks.py
RosettaX/pages/p04_calibrate/sections/s04_apply/layout.py
RosettaX/pages/p04_calibrate/sections/s04_apply/main.py
RosettaX/pages/p04_calibrate/sections/s04_apply/services.py
RosettaX/pages/p05_settings/__init__.py
RosettaX/pages/p05_settings/ids.py
RosettaX/pages/p05_settings/main.py
RosettaX/pages/p05_settings/state.py
RosettaX/pages/p05_settings/utils.py
RosettaX/pages/p05_settings/sections/__init__.py
RosettaX/pages/p05_settings/sections/s01_default/__init__.py
RosettaX/pages/p05_settings/sections/s01_default/main.py
RosettaX/pages/p05_settings/sections/s01_default/schema.py
RosettaX/pages/p05_settings/sections/s01_default/services.py
RosettaX/pages/p05_settings/sections/s02_create/__init__.py
RosettaX/pages/p05_settings/sections/s02_create/main.py
RosettaX/pages/p05_settings/sections/s02_create/services.py
RosettaX/pages/p05_settings/sections/s03_delete/__init__.py
RosettaX/pages/p05_settings/sections/s03_delete/main.py
RosettaX/pages/p05_settings/sections/s03_delete/services.py
RosettaX/pages/p06_help/__init__.py
RosettaX/pages/p06_help/main.py
RosettaX/profiles/RosettaMix.json
RosettaX/profiles/default_profile.json
RosettaX/profiles/martin.json
RosettaX/profiles/martin_test.json
RosettaX/utils/casting.py
RosettaX/utils/checks.py
RosettaX/utils/directories.py
RosettaX/utils/fcs_metadata.py
RosettaX/utils/io.py
RosettaX/utils/parser.py
RosettaX/utils/plottings.py
RosettaX/utils/reader.py
RosettaX/utils/runtime_config.py
RosettaX/utils/service.py
RosettaX/utils/styling.py
RosettaX/utils/ui_forms.py
RosettaX/workflow/__init__.py
RosettaX/workflow/apply_calibration/__init__.py
RosettaX/workflow/apply_calibration/fluorescence.py
RosettaX/workflow/apply_calibration/io.py
RosettaX/workflow/apply_calibration/services.py
RosettaX/workflow/apply_calibration/scattering/__init__.py
RosettaX/workflow/apply_calibration/scattering/dataframe_apply.py
RosettaX/workflow/apply_calibration/scattering/main.py
RosettaX/workflow/apply_calibration/scattering/mie_relation_builder.py
RosettaX/workflow/apply_calibration/scattering/models.py
RosettaX/workflow/apply_calibration/scattering/monotonic.py
RosettaX/workflow/apply_calibration/scattering/presets.py
RosettaX/workflow/calibration/__init__.py
RosettaX/workflow/calibration/fluorescence.py
RosettaX/workflow/calibration/mie_relation.py
RosettaX/workflow/calibration/scattering.py
RosettaX/workflow/calibration/scattering_services.py
RosettaX/workflow/model/__init__.py
RosettaX/workflow/model/scattering.py
RosettaX/workflow/parameters/__init__.py
RosettaX/workflow/parameters/detector_configuration.py
RosettaX/workflow/parameters/loader.py
RosettaX/workflow/parameters/model.py
RosettaX/workflow/parameters/optical_preview.py
RosettaX/workflow/parameters/particle_presets.py
RosettaX/workflow/parameters/services.py
RosettaX/workflow/parameters/table.py
RosettaX/workflow/parameters/detector_presets/bd_facs_canto_ii_fsc.json
RosettaX/workflow/parameters/detector_presets/bd_facs_canto_ii_ssc.json
RosettaX/workflow/parameters/detector_presets/beckman_cytoflex_fluorescence.json
RosettaX/workflow/parameters/detector_presets/beckman_cytoflex_ssc.json
RosettaX/workflow/parameters/detector_presets/generic.json
RosettaX/workflow/peak/__init__.py
RosettaX/workflow/peak/ids.py
RosettaX/workflow/peak/layout.py
RosettaX/workflow/peak/models.py
RosettaX/workflow/peak/registry.py
RosettaX/workflow/peak/services.py
RosettaX/workflow/peak/adapters/__init__.py
RosettaX/workflow/peak/adapters/base.py
RosettaX/workflow/peak/adapters/fluorescence.py
RosettaX/workflow/peak/adapters/main.py
RosettaX/workflow/peak/adapters/scattering.py
RosettaX/workflow/peak/callbacks/detector_dropdowns.py
RosettaX/workflow/peak/callbacks/graph.py
RosettaX/workflow/peak/callbacks/main.py
RosettaX/workflow/peak/callbacks/mutation.py
RosettaX/workflow/peak/callbacks/shared.py
RosettaX/workflow/peak/callbacks/visibility.py
RosettaX/workflow/peak/core/__init__.py
RosettaX/workflow/peak/core/detectors.py
RosettaX/workflow/peak/core/graphing.py
RosettaX/workflow/peak/scripts/__init__.py
RosettaX/workflow/peak/scripts/automatic_1d_peaks.py
RosettaX/workflow/peak/scripts/automatic_2d_peaks.py
RosettaX/workflow/peak/scripts/base.py
RosettaX/workflow/peak/scripts/k_mean_1d.py
RosettaX/workflow/peak/scripts/k_mean_2d.py
RosettaX/workflow/peak/scripts/manual_1d_click.py
RosettaX/workflow/peak/scripts/manual_2d_click.py
RosettaX/workflow/peak/scripts/proeminence_1d.py
RosettaX/workflow/peak/scripts/prominence_2d.py
RosettaX/workflow/peak/scripts/rosetta_mix.py
RosettaX/workflow/plotting/__init__.py
RosettaX/workflow/plotting/scatter2d.py
RosettaX/workflow/save/__init__.py
RosettaX/workflow/save/adapters.py
RosettaX/workflow/save/callbacks.py
RosettaX/workflow/save/ids.py
RosettaX/workflow/save/layout.py
RosettaX/workflow/save/models.py
RosettaX/workflow/save/services.py
RosettaX/workflow/sidebar/__init__.py
RosettaX/workflow/sidebar/services.py
RosettaX/workflow/table/__init__.py
RosettaX/workflow/table/fluorescence.py
RosettaX/workflow/table/layout.py
RosettaX/workflow/table/scattering.py
RosettaX/workflow/table/services.py
RosettaX/workflow/upload/__init__.py
RosettaX/workflow/upload/adapters.py
RosettaX/workflow/upload/callbacks.py
RosettaX/workflow/upload/ids.py
RosettaX/workflow/upload/layout.py
RosettaX/workflow/upload/models.py
RosettaX/workflow/upload/services.py
docs/make.bat
docs/temporary.txt
docs/_build/dummy/.doctrees/code.doctree
docs/_build/dummy/.doctrees/environment.pickle
docs/_build/dummy/.doctrees/index.doctree
docs/_build/dummy/.doctrees/references.doctree
docs/_build/dummy/.doctrees/sg_execution_times.doctree
docs/_build/dummy/.doctrees/theory.doctree
docs/_build/dummy/.doctrees/api/application.doctree
docs/_build/dummy/.doctrees/api/pages.doctree
docs/_build/dummy/.doctrees/api/utilities.doctree
docs/_build/dummy/.doctrees/api/workflows.doctree
docs/_build/dummy/.doctrees/gallery/index.doctree
docs/_build/dummy/.doctrees/gallery/sg_execution_times.doctree
docs/examples/README.rst
docs/fcs_file_standard/FCS_standard_3.0.pdf
docs/fcs_file_standard/FCS_standard_3.1.pdf
docs/fcs_file_standard/FCS_standard_3.2.pdf
docs/images/logo.svg
docs/source/code.rst
docs/source/conf.py
docs/source/index.rst
docs/source/references.rst
docs/source/sg_execution_times.rst
docs/source/theory.rst
docs/source/_static/default.css
docs/source/api/application.rst
docs/source/api/pages.rst
docs/source/api/utilities.rst
docs/source/api/workflows.rst
docs/temp/pros-cons-list.docx
docs/temp/pros-cons-list.pdf
tests/__init__.py
tests/test_calibration_scattering.py
tests/test_casting.py
tests/test_directories.py
tests/test_fcs_reader.py
tests/test_parameters_model.py
tests/test_parameters_table.py
tests/test_parser.py
tests/test_peak_adapters_base.py
tests/test_peak_graphing.py
tests/test_runtime_config.py
tests/test_runtime_config_profile_contract.py
tests/test_scattering_model_configuration.py
tests/test_service.py
tests/test_settings_default_services.py
tests/test_upload_services.py