LICENSE
README.md
pyproject.toml
pyoma/__init__.py
pyoma/common.py
pyoma/hpc.py
pyoma.egg-info/PKG-INFO
pyoma.egg-info/SOURCES.txt
pyoma.egg-info/dependency_links.txt
pyoma.egg-info/entry_points.txt
pyoma.egg-info/requires.txt
pyoma.egg-info/top_level.txt
pyoma/application/__init__.py
pyoma/application/enrichment.py
pyoma/browser/KmerEncoder.py
pyoma/browser/OrthoXMLSplitter.py
pyoma/browser/__init__.py
pyoma/browser/check_db_consistency.py
pyoma/browser/convert.py
pyoma/browser/db.py
pyoma/browser/db_contrib.py
pyoma/browser/decorators.py
pyoma/browser/exceptions.py
pyoma/browser/geneontology.py
pyoma/browser/hoghelper.py
pyoma/browser/hogidmap.py
pyoma/browser/homoeologs.py
pyoma/browser/idmapper.py
pyoma/browser/linkout.py
pyoma/browser/locus_parser.py
pyoma/browser/models.py
pyoma/browser/sanitychecks.py
pyoma/browser/search.py
pyoma/browser/suffixsearch.py
pyoma/browser/synteny.py
pyoma/browser/tablefmt.py
pyoma/browser/xref_contrib.py
pyoma/browser/build/__init__.py
pyoma/browser/build/builder.py
pyoma/browser/build/cachebuilder.py
pyoma/browser/build/dump.py
pyoma/browser/build/fingerprints.py
pyoma/browser/build/function_propagation_omagroup.py
pyoma/browser/build/hogconvert.py
pyoma/browser/build/keyword.py
pyoma/browser/build/main.py
pyoma/browser/build/suffixarray_helper.py
pyoma/browser/build/taxonomy_alignment.py
pyoma/browser/build/xref/__init__.py
pyoma/browser/build/xref/fetch.py
pyoma/browser/build/xref/filter.py
pyoma/browser/build/xref/gene_ontology.py
pyoma/browser/build/xref/map.py
pyoma/browser/hogprofile/__init__.py
pyoma/browser/hogprofile/build.py
pyoma/browser/hogprofile/hashutils.py
pyoma/browser/hogprofile/pyhamutils.py
pyoma/browser/hogprofile/query.py
pyoma/browser/hogprofile/tree_helper.py
pyoma/inference/__init__.py
pyoma/inference/algo.py
pyoma/inference/db.py
pyoma/inference/tabledef.py
pyoma/orthoxml/__init__.py
pyoma/orthoxml/compare.py
tests/test_common.py