`msmu._read_write._reader_registry`

read_diann `module-attribute`

read_diann = _ReadDiannFacade()

Alias for :class:_ReadDiannFacade.

Parameters:

Name	Type	Description	Default
`search_dir`	`str \| Path`	Path to the DIA-NN output directory.	required

Returns:

Type	Description
`_ReadDiannFacade`	md.MuData: A MuData object containing the DIA-NN data at precursor level

Usage

mdata_precursor = mm.read_diann(search_dir) mdata_protein_group = mm.read_diann.from_pg(search_dir)

read_fragpipe = FragPipeFacade()

Alias for :class:FragPipeFacade.

Parameters:

Name	Type	Description	Default
`search_dir`	`str \| Path`	Path to the FragPipe output directory.	required

Returns:

Type	Description
`FragPipeFacade`	md.MuData: A MuData object containing the FragPipe data at precursor level

Usage

mdata_precursor = mm.read_fragpipe(search_dir) mdata_protein_group = mm.read_fragpipe.from_pg(search_dir)

read_maxquant = _MaxQuantFacade()

Alias for :class:_MaxQuantFacade.

Parameters:

Name	Type	Description	Default
`search_dir`	`str \| Path`	Path to the MaxQuant output directory.	required

Returns:

Type	Description
`_MaxQuantFacade`	md.MuData: A MuData object containing the MaxQuant data at precursor level

Usage

mdata_precursor = mm.read_maxquant(search_dir) mdata_protein_group = mm.read_maxquant.from_pg(search_dir)

read_h5mu(h5mu_file)

Reads an h5mu file (HDF5) and returns a MuData object.

Parameters:

Name	Type	Description	Default
`h5mu_file`	`str \| Path`	Path to the H5MU file.	required

Returns:

Type	Description
`MuData`	md.MuData: A MuData object.

read_sage(search_dir, label, _quantification=True)

Reads Sage output and returns a MuData object.

Parameters:

Name	Type	Description	Default
`search_dir`	`str \| Path`	Path to the Sage output directory.	required
`label`	`Literal['tmt', 'label_free']`	Label for the Sage output ('tmt' or 'label_free').	required
`_quantification`	`bool`	Whether to include quantification data. Default is True.	`True`

Returns:

Type	Description
`MuData`	md.MuData: A MuData object containing the Sage data.