msmu._read_write._sage
LfqSageReader
LfqSageReader(search_dir, _quantification=True)
Bases: SageReader
Reader for label-free Sage output files.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
search_dir
|
str | Path
|
Path to the Sage output directory. |
required |
_quantification
|
bool
|
Whether to include quantification data (lfq.tsv). Default is True. |
True
|
SageReader
SageReader(search_dir, label=None)
Bases: SearchResultReader
Reader for Sage output files.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
search_dir
|
str | Path
|
Path to the Sage output directory. |
required |
label
|
Literal['tmt', 'label_free'] | None
|
Label for the Sage output ('tmt' or 'label_free'). |
None
|
TmtSageReader
TmtSageReader(search_dir)
Bases: SageReader
Reader for TMT-labeled Sage output files.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
search_dir
|
str | Path
|
Path to the Sage output directory. |
required |