msmu._utils.subset

split_tmt

split_tmt(mdata, map)

Split TMT channels in a MuData object into separate modalities based on a mapping.

Parameters

mdata : MuData The MuData object containing TMT data. map : dict[str, str] | pd.Series | pd.DataFrame A mapping of filenames to set names. If a DataFrame is provided, it should have two columns: the first for filenames and the second for set names.

Returns

MuData The modified MuData object with TMT channels split into separate modalities.

subset

subset(mdata, modality, cond_var=None, cond_obs=None)

Subset MuData object based on condition.

Parameters:

Name	Type	Description	Default
mdata	MuData	MuData object to subset.	required
modality	str	Modality to subset.	required
cond_var	str	Condition to subset variables.	None
cond_obs	str	Condition to subset observations.	None

Returns:

Name	Type	Description
mdata	MuData	Subsetted MuData object.