msmu._utils.utils

get_modality_dict

get_modality_dict(mdata, level=None, modality=None)

Get modality data from MuData object

rename_obs

rename_obs(mdata, map)

Rename an observation (obs) column in the MuData object.

Parameters

mdata : md.MuData The MuData object containing the observation to rename. obs_name : str The current name of the observation to rename. new_obs_name : str The new name for the observation.

Returns

md.MuData The modified MuData object with the renamed observation.