accelerate>=1.9
anndata>=0.12
datasets!=4,>=2.19.1
huggingface-hub>=0.34.3
numpy>=1.24
python-dotenv>=1.1.1
scanpy>=1.11.3
sentence-transformers>=5.4
torch>=2.5
transformers>=4.57.1
zarr>=3.1.6

[dev]
build
pre-commit
ruff
twine

[eval]
scib>=1.1.7
umap-learn>=0.5

[test]
coverage
pytest
python-json-logger

[train]
wandb>=0.27
