crisscross/README.md,sha256=smxDdcyKjdV8--gzrG4-iHYUceVE5subnyOnaDnFyY4,13834
crisscross/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/cli_functions/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/cli_functions/handle_evolution.py,sha256=k3zKjRVFSqi_H7qCWBWDispD3rpuvJpT2mNApMJ0Jhs,1763
crisscross/cli_functions/plate_resuspension.py,sha256=tAV27u17XlScUWEBtFCQOqAI1sHopml-ohXAX9AW_7U,2877
crisscross/cli_functions/working_stock_creation.py,sha256=2Z0q8396XFJi6e6_LblM-x5PXgXnjzXZFmppG6ogJWQ,5796
crisscross/core_functions/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/core_functions/handle_link_manager.py,sha256=gsUyA92qChS0imD8GAA0WBmicNAt9oNYj2voh_U5lcg,9226
crisscross/core_functions/megastructure_composition.py,sha256=n4ge7Y90RYneifMebhVnymPcEWtDtF4OJNiEwaW-uLI,27840
crisscross/core_functions/megastructures.py,sha256=XmbNKPLfWuPQCiPmSJdF4IU0NxskXhHkvMWQ5Ktq0uM,102365
crisscross/core_functions/plate_handling.py,sha256=rXB8D1V8YNM3t-ffTOtpiC2INPiq-tCo0a5NzgS5la4,13757
crisscross/core_functions/slat_design.py,sha256=ykOi7kdQlkoP9FiuUujrpkH6r-j4ZPPZWRoygxWbn5U,5330
crisscross/core_functions/slats.py,sha256=c3QIoFtWawt2byLXXQatRUZ_BBe08x0yndfUEScRCCY,12239
crisscross/core_functions/stepwise_plots.py,sha256=Qm9AEey91Ksq3pshcpkWynfHQKFfr0w4ioIQSTZXYHU,12075
crisscross/dna_source_plates/assembly_plates/P3250_SW_antihandles.xlsx,sha256=sE1dnwiOoOLfTlMSlmLiPG7RvIJYbGmdw9n0osxJ3H4,25564
crisscross/dna_source_plates/assembly_plates/P3251_CW_antihandles.xlsx,sha256=ft6JO1Rwv2Tsydr7TaCRetCKyR3u97k0_MpdPa3M7H0,25635
crisscross/dna_source_plates/assembly_plates/P3252_SW_antihandles.xlsx,sha256=ga_7HcX3-Ik5pjhQvmyWROLuwvXBlEvDxVnmolOwPiE,21100
crisscross/dna_source_plates/assembly_plates/P3533_SW_handles.xlsx,sha256=YZJEG33qPWSjUbvb6h_8LrMXbWC1LMnD_z_aZi5qwsM,25433
crisscross/dna_source_plates/assembly_plates/P3534_SW_handles.xlsx,sha256=CDP7LHMz1CLkKBtE8wv5ZNbO60LIeIeTvDLtiDjowlE,25576
crisscross/dna_source_plates/assembly_plates/P3535_SW_handles.xlsx,sha256=3jnpNp_LCN2X6aHkcB5tcdYgfXHVzSYU3efdqVgMHjo,21064
crisscross/dna_source_plates/assembly_plates/P3536_MA_h2_antihandles.xlsx,sha256=PPuEZKiEkvRqmJLSTEbQeVxqtAxfJWhzn1Rwz-4DtMk,25598
crisscross/dna_source_plates/assembly_plates/P3537_MA_h2_antihandles.xlsx,sha256=maacLRL2SW2-uznpThgSMQdyNyO7sCDDzNk9W5zaQBY,25648
crisscross/dna_source_plates/assembly_plates/P3538_MA_h2_antihandles.xlsx,sha256=lE4Q_w4ddok16cBAMYie3CG8fXtst5PfGxYkQgFX0gI,21124
crisscross/dna_source_plates/assembly_plates/P3601_MA_H5_handles_S1A.xlsx,sha256=ZnqzU2H0Hp3pJNy1vAOQbV4NxqJ8m1oSBo-buAEHIrA,25499
crisscross/dna_source_plates/assembly_plates/P3602_MA_H5_handles_S1B.xlsx,sha256=nsQASJwfDxXUmjQzRLdMipl3ox9Hi_dVpCQM7uFMyzw,25633
crisscross/dna_source_plates/assembly_plates/P3603_MA_H5_handles_S1C.xlsx,sha256=1cT35Tccdzj-7eIG7D-o7k8VGgV-scXuXkfRpoEt574,21107
crisscross/dna_source_plates/assembly_plates/P3604_MA_H2_antihandles_S1A.xlsx,sha256=Xv461T_2DFP0pJv8gwdJSu6nsMlNjgLCuamkDxZ1IUA,25625
crisscross/dna_source_plates/assembly_plates/P3605_MA_H2_antihandles_S1B.xlsx,sha256=whQu1SJxnjJVgFpR-mbRfPquZDjvsS-jJFeOhKhUqOM,25693
crisscross/dna_source_plates/assembly_plates/P3606_MA_H2_antihandles_S1C.xlsx,sha256=fl8YbrcNE5p27YKLIz7iXPmgk86Lf6EEr25rf9S-Tcc,21139
crisscross/dna_source_plates/assembly_plates/sw_src011_fluorescenthandles.xlsx,sha256=na-h-DpdsYB-fTvBRWmdTEYILdggZGjvZOqvoe_PrpQ,20480
crisscross/dna_source_plates/cargo_plates/P3510_SSW_cnt_patterning.xlsx,sha256=mbVS0A3Sj3fdffLXGeh_VYAmOQII7Tyr5vR35FOSzLg,22539
crisscross/dna_source_plates/cargo_plates/P3518_MA_octahedron_patterning_v1.xlsx,sha256=clyn2QGVqrFRc1haZOcv90KnmQ_GDo0aNtnO_w9Nqoo,16634
crisscross/dna_source_plates/cargo_plates/P3628_SSW_plate.xlsx,sha256=7hNqpAu19gmoQI0L9Y4_zXHnXL0frRWYUE1UAY1p5QA,12762
crisscross/dna_source_plates/cargo_plates/P3837_SSW_fribourg_cnt_2.xlsx,sha256=6-7i2wfzjg_qr0zQ-QEjwedkE1bkfeyffClnjZ1jZuU,21321
crisscross/dna_source_plates/cargo_plates/P3945_SSW_fribourg_cnt_3.xlsx,sha256=WIPX8IcMR46tZGB_ziGSfQmQur9Zg59EeVaiun4xoVA,18002
crisscross/dna_source_plates/cargo_plates/sw_src004_pulldownhandles.xlsx,sha256=_86vApsqqS9e5LpbXlyNvmJXIi8LaWySxZrYWENmUsY,19418
crisscross/dna_source_plates/cargo_plates/sw_src005_antiNelsonQuimby_cc6hb_h2handles.xlsx,sha256=k9pUcCxWcNlqxQ2DI_zQSt_dn6vz7mfs1-1bf0Bo2Vc,17410
crisscross/dna_source_plates/cargo_plates/sw_src007_nelson_quimby_bart_edna.xlsx,sha256=hMhR8tgTByl0E2qt7UzRc-AMWRS2ev8WxEE0XfeM-LI,19886
crisscross/dna_source_plates/cargo_plates/sw_src010_nelson_quimby_bart_edna_maxed.xlsx,sha256=dKNLnriEtMuDksNBARE-bW2vpKfAhZv0AFOd9m54Jyg,26757
crisscross/dna_source_plates/double_barrel_plates/P3907_MAD_Double-Barrel_position16.xlsx,sha256=98pOtk8VF-twncL2hCIZc-TWvbXTLwNFDzq1mNUW2Cw,27282
crisscross/dna_source_plates/flat_staple_plates/sw_src002_slatcore.xlsx,sha256=HES1lx2QBuWMMwOtRKkP_KIwS-fcZQQiWPrnZ-2zSto,21330
crisscross/dna_source_plates/flat_staple_plates/sw_src009_control_max.xlsx,sha256=83oMm_VhHf9jvM-EiiUO0CELUCPudIuC5yX57OJzA4E,23677
crisscross/dna_source_plates/latest_assembly_plates/P3649_MA_H5_handles_S1A.xlsx,sha256=NP4Dc8LtINGpBHuEXiu6CxK2YepXRK0NeRNmpOb5kD8,30952
crisscross/dna_source_plates/latest_assembly_plates/P3650_MA_H5_handles_S1B.xlsx,sha256=_HDOk1k9-BdL1_kDF9phdqAB7xmcNyvrEYj95ib9WAI,30987
crisscross/dna_source_plates/latest_assembly_plates/P3651_MA_H5_handles_S1C.xlsx,sha256=5jxp-Y1vYyY8PrFdK-uARvTcN8WpZeAH4WuEegSogoo,26108
crisscross/dna_source_plates/latest_assembly_plates/P3652_MA_H5_handles_S2A.xlsx,sha256=IhO13yUnSROkHR6nYYepPYp1TwcpIcbSYKA9Iw4IsOA,31004
crisscross/dna_source_plates/latest_assembly_plates/P3653_MA_H5_handles_S2B.xlsx,sha256=l5Ztim5ZiRMomX8n4dD0TeClWvhszNAx4qr42uhf44E,31058
crisscross/dna_source_plates/latest_assembly_plates/P3654_MA_H5_handles_S2C.xlsx,sha256=36FNTHi4FGBzL-8CEXqlWTs2U8OJu1OkWbhr1Fu0ths,26123
crisscross/dna_source_plates/latest_assembly_plates/P3655_MA_H2_antihandles_S1A.xlsx,sha256=H4W0-JyDzs-FnUStwCIUdcafN4vbHNNerb-Zb9Rf9-A,31081
crisscross/dna_source_plates/latest_assembly_plates/P3656_MA_H2_antihandles_S1B.xlsx,sha256=tLVpciYJdJmBXo2niHlMA4gIuwlXU-IHLvI5S3xAhfo,31059
crisscross/dna_source_plates/latest_assembly_plates/P3657_MA_H2_antihandles_S1C.xlsx,sha256=DZz6V6edM0iyub9Qzs24jro-6ATA62D3DwvMiwO11ZY,26107
crisscross/dna_source_plates/latest_assembly_plates/P3658_MA_H2_antihandles_S2A.xlsx,sha256=QyZg1T_wQLkvMdCD9m1QASVTOLC2jw_VO-ts9q019IU,31145
crisscross/dna_source_plates/latest_assembly_plates/P3659_MA_H2_antihandles_S2B.xlsx,sha256=HVVMzgRyCpPXymGs2l5VM32MmHyiMwJAFKFw2b0ZWTw,31099
crisscross/dna_source_plates/latest_assembly_plates/P3660_MA_H2_antihandles_S2C.xlsx,sha256=P4CqrcHws5sDoUPZzp0t7uD3goNAAldGv6jTbgpaZRU,26153
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3250_SW_antihandles.xlsx,sha256=Qjr7htJuXtGw3Xc35K7iBSrFdD52oQIjXeoffvCxq2M,12256
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3251_CW_antihandles.xlsx,sha256=D10Jy9tTiGbO-T9HUgNTETfECyOngIAdl9fKW7OXXF0,12251
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3252_SW_antihandles.xlsx,sha256=HWlfUqUHCkYT2tJYyqT9CAdZsD-Z37n5gGSS1RtmK2E,11650
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3533_SW_handles.xlsx,sha256=6kjO5g9PVIcDcRVqFPCdCM-SVA-U0aPTvUk4GPLZHsw,12289
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3534_SW_handles.xlsx,sha256=5DWG4HhZWGrUw6_PY8Yzd1A49IqCOgRgxLlMVi8bhdc,12226
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3535_SW_handles.xlsx,sha256=bBUMSyQCTOsJC7BD8-Zy5M-IjYgfZdu7aWWbgaDdZDk,11663
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3536_MA_h2_antihandles.xlsx,sha256=igqVtkYB8HGTyikRESMi6iis8rqkY5lp1vfTRA_o0i4,12812
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3537_MA_h2_antihandles.xlsx,sha256=peL_aHol-8LfRd5a75mSL95Kf8r7EiklHklmKcFSNag,12911
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3538_MA_h2_antihandles.xlsx,sha256=0MeF0RuEVq64Meda2rwK6Jtipf2pMJNfbk3WxW-pU4k,12112
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3601_MA_H5_handles_S1A.xlsx,sha256=WDm-pGPQAYh5wREh9M4h6ITtoDgIfi89WjqcEjgo-20,16960
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3602_MA_H5_handles_S1B.xlsx,sha256=mkVXLwWAh9i53Hu0A2Xb-GtMCNYnJ296xYB1Nw6NF64,17207
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3603_MA_H5_handles_S1C.xlsx,sha256=zqSDVIcfzSQ131y0t-Z42HnJ9dSkdkM6TPaQukrU40U,14043
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3604_MA_H2_antihandles_S1A.xlsx,sha256=SBv0A7c16KoOQ168Bv8-nY_uS_TVHI1C2VpJ--Ikht4,17009
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3605_MA_H2_antihandles_S1B.xlsx,sha256=08gFNBLSTkWidmfJ8CW-Yqnf2_YU3f4cqruw1ApA2Ss,17191
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3606_MA_H2_antihandles_S1C.xlsx,sha256=3VreOmD2iA-wzBFT6GaCzUSr5jUnRKsWqoZmeP-lp5s,14078
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3649_MA_H5_handles_S1A.xlsx,sha256=7HFSA1nSEKeJSkGaFgz47QkAfhvb_QoMHWPuifyXCy8,16960
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3650_MA_H5_handles_S1B.xlsx,sha256=Jb-ErSuhw5vnr1SIgTmY_U3f5EV-QjYmdr6nnEcqXgA,17206
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3651_MA_H5_handles_S1C.xlsx,sha256=eOTcehHz13JAxA0IpsFaEqmMf0MO4Cnx9jN1E4szoTA,14042
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3652_MA_H5_handles_S2A.xlsx,sha256=8Cg0MzzhhpX63sfdWMYpE8Ahot_AGWDqZJGhqnmRpSc,17070
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3653_MA_H5_handles_S2B.xlsx,sha256=frumHdjkI8dvvl9qlHfFadZ6xhz0Rfb9FPE9oa-vncM,17300
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3654_MA_H5_handles_S2C.xlsx,sha256=ZnsEtEYXj7figr0m8cbgRmmtrU1ZgnzpS2m_Delrs3c,14147
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3655_MA_H2_antihandles_S1A.xlsx,sha256=4JET-ci8PO74rZWsTe_ITNSE1Ga6tL6m6gaEDRVLiDg,17008
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3656_MA_H2_antihandles_S1B.xlsx,sha256=RX_tffnvpNrGyZLtOzhvLmE4_g8cb_WkeHsKbLmQFsM,17190
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3657_MA_H2_antihandles_S1C.xlsx,sha256=QKdhZ7OUmG2Tz3SSqMGb_JCbtqTPaGRHrDstaV3mIWw,14078
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3658_MA_H2_antihandles_S2A.xlsx,sha256=vopZYO2O67ZPsDFsnWkCvEANCSAK5cqlmzg-7h_cMKU,17145
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3659_MA_H2_antihandles_S2B.xlsx,sha256=yLMelmW5emFm4_5qO3t3gWmuzW52cOJdRQqhaO7566w,17286
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/P3660_MA_H2_antihandles_S2C.xlsx,sha256=krUzELKIKixuWG5ElLmBS4a9s-EsKpWbn35f8e0aEK8,14169
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3649_MA_H5_handles_S1A.xlsx,sha256=Y82bqwlnb9cp5hs2vtz900VqZXG8yZP5PrR2Ar0h8bc,19495
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3650_MA_H5_handles_S1B.xlsx,sha256=S7N2fJ4P3LPhP1binFlcuzAyY4Pr5dqmfciC6dcFjNc,19629
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3651_MA_H5_handles_S1C.xlsx,sha256=Lu59YrYes0egDCF44G2Md1fHrj9jEM4HyHpBoH0EUlA,14797
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3652_MA_H5_handles_S2A.xlsx,sha256=C81UoZW3J-maKOAA_YmzkT-87lJ3SvqUnImLuf1TwhU,19510
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3653_MA_H5_handles_S2B.xlsx,sha256=LT5EHuv9OOxImPIiqMtP3kdwCo5GTQQMOSOClMZGM5A,19611
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3654_MA_H5_handles_S2C.xlsx,sha256=p7tKqvNBrjXKuQnjfL_2LHZGB2m3qb_hSfTvtAdMZe4,14792
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3655_MA_H2_antihandles_S1A.xlsx,sha256=4unaQO13CpJg_JChejtHdN5Z_bbNT45asal5FbfEfTI,19574
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3656_MA_H2_antihandles_S1B.xlsx,sha256=u1MJCFqtSDSNNJl24qXdQB4dHHBzspaQZuz56mTrZ70,19683
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3657_MA_H2_antihandles_S1C.xlsx,sha256=itPCDxXhQHPs2KUuFUgigYxBQdUbal-ucGmie8XS-Ws,14818
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3658_MA_H2_antihandles_S2A.xlsx,sha256=zwGeLlLx1GJEiUC4aiiiiL-px_5CdC1_qo0Tm2K2VsM,19585
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3659_MA_H2_antihandles_S2B.xlsx,sha256=KYERrI9sBnUxDUzuy5nWAV7BlfJOctMOdUPSrMW8rBM,19691
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_order_sheets/IDT_ORDER_P3660_MA_H2_antihandles_S2C.xlsx,sha256=2y02wa6seeAKOJl7f4i0Y0QNOcs2SjyxOa95tpBXwI4,14822
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_spec_sheets/batch_1.xlsx,sha256=UUmRos_t8QLNc56QfZwrTCiPLed6IqsrIUGMehe6e9s,138422
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_spec_sheets/batch_2.xlsx,sha256=Q_NMx0PBh3o-hzCMNyjfZQRIbkewGP1YR_lKfF600hQ,265143
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_spec_sheets/batch_3.xlsx,sha256=ufTU_KoI06o5P0gnoJp2LcK-N6lKs3tDBKtXx2Cb_oU,32352
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/maximal_order/IDT_spec_sheets/batch_4.xlsx,sha256=5IDi4Xw-4XX_Z1TSrEQpKURwFjcSUqr8OJt6ccuKsn8,45788
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets/IDT_ORDER_P3601_FK_H5_handles_S1A.xlsx,sha256=aUDDWu2i05fkgE8CqTM__vjCE043mpzjSd_SNSgf2aU,19502
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets/IDT_ORDER_P3602_FK_H5_handles_S1B.xlsx,sha256=pPYL65ttFo-wQfOgKK6cweSmShzmAKoh2SqaQBcDYBU,19634
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets/IDT_ORDER_P3603_FK_H5_handles_S1C.xlsx,sha256=4RxIxdZJ3kmX1UVa3GdvutRe_G23oiTQ2GFY-aj-5to,14803
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets/IDT_ORDER_P3604_FK_H2_antihandles_S1A.xlsx,sha256=OMiXBEu-kayaZUsWUDj-5TSB3ADwCSV5fAg6r7c3Inc,19582
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets/IDT_ORDER_P3605_FK_H2_antihandles_S1B.xlsx,sha256=O-Pz4E4XBvcZesODCHds4lMrb2ohYKOwLyw5txmGAGA,19689
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets/IDT_ORDER_P3606_FK_H2_antihandles_S1C.xlsx,sha256=MlXsXWr5e1R1DuX2VO2P57NNoJxu1QMPHj3jJpnLAYo,14824
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets_obfuscated/IDT_ORDER_SCRAMBLED_P3601_FK_H5_handles_S1A.xlsx,sha256=1ATEukZPmwyNjoyX43nuRe_RQk8vciZDNSh1KNqqE90,20252
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets_obfuscated/IDT_ORDER_SCRAMBLED_P3602_FK_H5_handles_S1B.xlsx,sha256=p_xgdkHf8OGEKpeDFLhIVk-FXAylM56i5zFAIkm2Qrw,20328
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets_obfuscated/IDT_ORDER_SCRAMBLED_P3603_FK_H5_handles_S1C.xlsx,sha256=MW2MyvOWWTIramjWLx8l5W7RsK2VtomJ8dOqe9fLJmI,16587
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets_obfuscated/IDT_ORDER_SCRAMBLED_P3604_FK_H2_antihandles_S1A.xlsx,sha256=Wq0psew6lZnpsS8LfubPi9B2_FSGXF3I0RO3sI_3j9s,20313
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets_obfuscated/IDT_ORDER_SCRAMBLED_P3605_FK_H2_antihandles_S1B.xlsx,sha256=fT-TIJfyjaPubFFwqTvPMws8hNX7gJLdaf0ybJGmVSQ,20342
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_order_sheets_obfuscated/IDT_ORDER_SCRAMBLED_P3606_FK_H2_antihandles_S1C.xlsx,sha256=hvlDOHCG3E_n6re5Bt91TWR0Re-z1RBV2FOvDkgZqKA,16523
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_plate_specs/3601-3603.xlsx,sha256=Zua47P33EnP-k0ne3w8A5FETljmNkM6YrJ-fHpT47cs,106967
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/new_assembly_handle_library_orders/order_1_test/IDT_plate_specs/3604-3606.xlsx,sha256=DbHh43rptPDHwGVwK4bNgGu3LjQOjHP3SRaFw8kCMlc,103990
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/not ordered/PX1_MA_h2_handles.xlsx,sha256=u4Yhqr6rbYLc3Wv770P2sP0SZQbfwCA3Fbg2HYSW0Kg,12811
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/not ordered/PX2_MA_h2_handles.xlsx,sha256=OC7SfTsS8whePKgn-1OpEIttve3SFvyFrN4anxqo8Tk,12944
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/not ordered/PX3_MA_h2_handles.xlsx,sha256=QZp-hXpUQkzF_ek28hjeMAa0mjNK5PvEF6WC4SB6O28,12107
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/previous_names/P3247_SW_handles.xlsx,sha256=6kjO5g9PVIcDcRVqFPCdCM-SVA-U0aPTvUk4GPLZHsw,12289
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/previous_names/P3248_SW_handles.xlsx,sha256=5DWG4HhZWGrUw6_PY8Yzd1A49IqCOgRgxLlMVi8bhdc,12226
crisscross/dna_source_plates/old_plate_format/assembly_handle_plates/previous_names/P3249_SW_handles.xlsx,sha256=bBUMSyQCTOsJC7BD8-Zy5M-IjYgfZdu7aWWbgaDdZDk,11663
crisscross/dna_source_plates/old_plate_format/cargo_plates/P3510_SSW_biotin_obsolete.xlsx,sha256=6f3rTnjHfDMo6kRC3-rnp-zPGExnBJkM1LQ8PMadf1w,11765
crisscross/dna_source_plates/old_plate_format/cargo_plates/P3510_SSW_cnt_patterning.xlsx,sha256=dNku7KRk1k9RnUe1mkA0VS-mKxEJ-v4UjrkfB7-et9w,16806
crisscross/dna_source_plates/old_plate_format/cargo_plates/P3518_MA_octahedron_patterning_v1.xlsx,sha256=RUCrdLn6O4JS4R_p60akwow-Otd7SVp0z6ZWAJndBW0,14906
crisscross/dna_source_plates/old_plate_format/cargo_plates/P3628_SSW_plate.xlsx,sha256=VC_nI07G4VT-jCyU73oycdY9zfdim1iK14yMbFtO2OM,8192
crisscross/dna_source_plates/old_plate_format/cargo_plates/sw_src004_polyAgridiron.xlsx,sha256=JgFBnN9_m0fc7wSEQk-ZG9fiobsJPWfsCNqXkuDMJvE,17545
crisscross/dna_source_plates/old_plate_format/cargo_plates/sw_src005_antiNelsonQuimby_cc6hb_h2handles.xlsx,sha256=GVrFUTqaLgLy21jrWHl1ZEcRvvB4I54w8c22SWoCW30,19756
crisscross/dna_source_plates/old_plate_format/cargo_plates/sw_src007_nelson_quimby_bart_edna.xlsx,sha256=yBThYrsrWpm0QWRoi7ze9eOHazs0WA50cwczqAAiPaM,18453
crisscross/dna_source_plates/old_plate_format/cargo_plates/sw_src008_lef1-scramble-7hb.xlsx,sha256=sDRCcQteXfmpm_2ppSbY2lcel_Iai6R5Jb5KnKI2z-Q,19007
crisscross/dna_source_plates/old_plate_format/cargo_plates/sw_src010_nelson_quimby_bart_edna_maxed.xlsx,sha256=vAE5clSAiWepnmSFsU4jhWDeTgYWiJ_tqRUtA-Kb2AY,14756
crisscross/dna_source_plates/old_plate_format/cargo_plates/old_format/P3518_MA_octahedron_patterning_v1.xlsx,sha256=eP3y8RsxxZAFhiB21RNsKB0rer9oZRPhRbpIAcD_ocU,12988
crisscross/dna_source_plates/old_plate_format/cargo_plates/old_format/sw_src005_antiNelsonQuimby_cc6hb_h2handles.xlsx,sha256=VrAjS2NmQ_rMGBFrcw76rN1CO1bncIpbE9Gm6BBAW2g,18081
crisscross/dna_source_plates/old_plate_format/cargo_plates/old_format/sw_src007_nelson_quimby_bart_edna.xlsx,sha256=TzIDpEFGhySum1wq5BYe52z-pQ0I0LLYa_bkN5yTIbo,16698
crisscross/dna_source_plates/old_plate_format/cargo_plates/spec_sheets/P3628_specs.xlsx,sha256=2_TSAE0l7aQyzUtbws0dGIxRwugJch62kbDaC09LGtY,9019
crisscross/dna_source_plates/old_plate_format/core_plates/P2854_CW_seed_plug_center.xlsx,sha256=U01T2fciya1oqv1VYjburNuSW4w_1BNqU9ZBF_4SO0E,16449
crisscross/dna_source_plates/old_plate_format/core_plates/P3339_JL_seed_plug_corner.xlsx,sha256=j8DuXzCtBAvTgCn3uRd3d-Ae40LbbqqfClZ5yVgxI1Y,13592
crisscross/dna_source_plates/old_plate_format/core_plates/P3555_SSW_combined_seeds.xlsx,sha256=BGOBe7udfwZqF1E3YCV2X_SuOztOrDQ4r7TkEi2oju4,11846
crisscross/dna_source_plates/old_plate_format/core_plates/P3578_SSW_3primeTT.xlsx,sha256=yuClM0l95BUhoid0HrxEcDQuQBbaIf-_7ECRIaO_2dU,20573
crisscross/dna_source_plates/old_plate_format/core_plates/P3621_SSW_seed_plug_center_8064.xlsx,sha256=z-PDu8twwx7wJucaoEJxKHo6LGMrFYumA0lzQtU7_Fw,9675
crisscross/dna_source_plates/old_plate_format/core_plates/P3643_MA_combined_seeds_8064.xlsx,sha256=q6NNguck5j6y8cK7PzqsaljQKOJsz596R32-60NF1A8,11906
crisscross/dna_source_plates/old_plate_format/core_plates/sw_src001_seedcore.xlsx,sha256=5HOhYIFHKdeU188_7g9JJ4OGGXlhXGR92cjx3dtk9ug,29503
crisscross/dna_source_plates/old_plate_format/core_plates/sw_src002_slatcore.xlsx,sha256=y8k8YiSwbeBPUwkKHtzo_jJJlUq2djwAlBib8YLB6-8,25518
crisscross/dna_source_plates/old_plate_format/core_plates/sw_src004_polyAgridiron.xlsx,sha256=knvNoOG0E5jxuOpoZmCv9Ax0pKqf-1fEOJqHVi_ESYY,17520
crisscross/dna_source_plates/old_plate_format/core_plates/sw_src009_control_max.xlsx,sha256=rz-2sGRVbjVvoRcRZgPqs1vKYgFA0QQoHQktKYemLEY,16765
crisscross/dna_source_plates/old_plate_format/core_plates/spec_sheets/P3621_specs.xlsx,sha256=o1btWzIqO6DqtP8PY1m3qbQZ5dKZqflZCsHTRsOSalw,13717
crisscross/dna_source_plates/old_plate_format/core_plates/spec_sheets/P3643_specs.xlsx,sha256=zzP0tKgfU8MDzTbIf3_2RjsR2PPRMziXDKl_8ykkK4U,22418
crisscross/dna_source_plates/old_plate_format/core_plates/spec_sheets/P3793_3794_specs.xlsx,sha256=Vdo5_q6fDH6JQ-hOt_5YfP_fsv7RNZtp_PpaRm3uwWE,156259
crisscross/dna_source_plates/seed_plates/P2854_CW_seed_plug_center.xlsx,sha256=RPqsSEPEvzwo4n2H0E1S2z276rNupKESAkgFba7vKr4,18746
crisscross/dna_source_plates/seed_plates/P3339_JL_seed_plug_corner.xlsx,sha256=oxtz3sFNUtY552bPSEvLYdx7DEbz8915_2WXOpurrM8,15055
crisscross/dna_source_plates/seed_plates/P3555_SSW_combined_seeds.xlsx,sha256=10sYPl-HApVWKI_Df3JadGus1R5YZGbP5tHLMcNVxFE,18067
crisscross/dna_source_plates/seed_plates/P3621_SSW_seed_plug_center_8064.xlsx,sha256=3mJB4GjKtkH79aFKQi-agEX4rtM9KCYSmmPtpMv-v-k,15087
crisscross/dna_source_plates/seed_plates/P3643_MA_combined_seeds_8064.xlsx,sha256=3qfUFuw2CMci1sl9jWvMZecXe7yHQ6or3e2Qh87svGU,26910
crisscross/graphics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/graphics/blender_3d.py,sha256=ROGJBbA_2JF-P2AVvQmZJvSMD5k7JX0EOkoLsjuqsgE,31526
crisscross/graphics/pyvista_3d.py,sha256=n2622x_E2K04kzs5FCWGxMdrXa1GWHffhmlIdlpX2D0,15268
crisscross/graphics/static_plots.py,sha256=Pxx0tAFQuGgnPGlx1SV5wW2iCt658DscFgGV6ZRwSvI,20598
crisscross/helper_functions/__init__.py,sha256=cdPHPnske15ZDpXTbweGad2KQ4SjjDJzFBzKP56jFlc,6324
crisscross/helper_functions/lab_helper_sheet_generation.py,sha256=gM0F5mA8syhjX6XhT2a8RYx43smxkuAWVvBy8I-MDjA,38493
crisscross/helper_functions/simple_plate_visuals.py,sha256=NSuZZzpwwGM7sio52u9SCRPwWVk60HH3wlrtLfBNg0Q,7215
crisscross/helper_functions/slat_salient_quantities.py,sha256=agZXW9cZg_OYYcpIKoQc6QZhEpofNOhn8spjz5BVw6Q,678
crisscross/helper_functions/slurm_process_and_run.py,sha256=1vDPPrcEJ_EHHoCRqh2ikoLvuSC4yL6gdgCtV7poBYo,1295
crisscross/helper_functions/standard_sequences.py,sha256=VSTHaTlBBWCC1PO8CmYX3rRHaw-Hw0r66yEOgMJDJ2I,1151
crisscross/plate_mapping/__init__.py,sha256=Vm5sYb5MJRaIomexFsx_6bHa-4z4alYPrtXqx58uioA,7243
crisscross/plate_mapping/hash_cad_plates.py,sha256=_F08m8mG5yTJoJMD6b5jfISVA2QGHLHjQFdZP_fc6NY,7027
crisscross/plate_mapping/plate_constants.py,sha256=EpRWhy1Xy-DWZ1qFEpg-ZNq-il5QChD5JPLEIUjg0H4,5965
crisscross/plate_mapping/non_standard_plates/__init__.py,sha256=jIa3JHlggq27zEE-sK8gl3Sf331gMiTaaHTT4OpD4S8,2078
crisscross/plate_mapping/non_standard_plates/cargo_plates.py,sha256=l9Z2yirqhIA3mHiG2ZFTQCsDHKMgro_ls_xN4juFlRA,2518
crisscross/plate_mapping/non_standard_plates/core_plates.py,sha256=eiRg5Pdoa-1MvgwvCfpUXdkEfrkjbHy86RIaGaxbC0Q,1988
crisscross/plate_mapping/non_standard_plates/crisscross_plates.py,sha256=3gi06IaVoxr8_yaO3Fz8nBJaBvGiJ-zCzV3uXoyGwTQ,2064
crisscross/plate_mapping/non_standard_plates/hash_cad_plate_converter.py,sha256=Unf_YTc7iNm8fov2ZoHKkTeTEmfSTu9gU6-OlcZT4tM,9355
crisscross/plate_mapping/non_standard_plates/hybrid_plates.py,sha256=0qVpvuL7C9KJOue9P2jUvqt6WKq8bYk0agGwO2J1lSs,2463
crisscross/plate_mapping/non_standard_plates/old_cargo_plates.py,sha256=R1JGHsgIEO-TNgYqaZWomssIyZBIy4gRXR27Dk877go,5623
crisscross/plate_mapping/non_standard_plates/plate_concentrations.py,sha256=58p6kMn9KXctkYUC3HxYlYSkZKTK3MkEfhADXE7kfu0,2506
crisscross/plate_mapping/non_standard_plates/seed_plates.py,sha256=MJNENd4CkbsgDg1x3bsebS1XU_CkhujR0ZCh4W8A9kI,1998
crisscross/scripts/handle_evolution/64_seq_square_test.py,sha256=mTru8KbgDdIcpoNjYuudA42snqABFGohpBc5TXmSQjc,3380
crisscross/scripts/handle_evolution/batch_file_generation_round_1.py,sha256=IVKm8Bb0drCZ2-XJblvZ31q44Rjv8FberKSIRd_Lrgw,2773
crisscross/scripts/handle_evolution/debugging_evolution.py,sha256=CT657oz5MMEhU6_C9A4k_DvA0R2eONAXfHAENXUdZ94,1806
crisscross/scripts/handle_evolution/debugging_multi_split_evolution.py,sha256=NASNiBNn62FmuZ4ut0iTzSLCdLIAeHDPoOzuj8tyPsU,2246
crisscross/scripts/handle_evolution/heatmap_experiment_analysis.py,sha256=6-mRf7jR4BhbTj13pWfvGF0xur50n8poaf3MfbhjF_g,2130
crisscross/scripts/handle_evolution/hyperparam_sweep_1.py,sha256=TeOd-qhnBatI_0B3V_zLf_QMXKuEMgMNrUyMZysv2Os,6531
crisscross/scripts/handle_evolution/library_sweep_optuna_optimized.py,sha256=Mekx4_DgeWf900dAn-noOZIzouAjPz_PlAQvui_NqRE,2809
crisscross/scripts/handle_evolution/multi_run_quick_comparison.py,sha256=1MjVS_Y8LjBDp6S5X4xsNp2N9weMeHBuVLTOkpEocK4,2531
crisscross/scripts/handle_evolution/optimization_with_optuna.py,sha256=C5MbeSvVFXfEyhOqfnR3u4QELvuEtyWB-nFvVF1vACo,3467
crisscross/scripts/handle_evolution/optuna_sweep_quick_graph.py,sha256=bCU7t0f4RjHUF48X9Y0r4TSN1wHhSlX_qcgb3eMX4pI,645
crisscross/scripts/handle_evolution/optuna_viz.py,sha256=Ygg_s3hmBdIWTnvfAqv71wik3RPrrGnAFsahmFIhkIk,729
crisscross/scripts/handle_evolution/unfinished_scripts/hyperparam_sweep_2.py,sha256=Qju1Tpbh8H7EuJx_-8A6Kz4Vl-SEu3ENGZn0fx216UE,3040
crisscross/scripts/handle_evolution/unfinished_scripts/results_interp_2d.py,sha256=Fu36jTdb2CaI-toXm3EogRkMxJCahgyvBuQYoAB0mhg,1664
crisscross/scripts/handle_evolution/unfinished_scripts/results_interpretation.py,sha256=NIZ-VT78Bk1LYoOTXw5IDdi4lQNw2-DER6QNkWdcKSw,2485
crisscross/scripts/katzi/analyse_echo_plate_usage/analyse_echo_survey.py,sha256=nQ3xNxSWI64AQJYngrPvKBfO_yydgS5ZbREd0RkIu1M,15891
crisscross/scripts/katzi/analyse_echo_plate_usage/analyse_echo_survey_2.py,sha256=xC3GQQVRFXg72EPWMFNHfRR57gmdUUC_aDyinnAczOs,13595
crisscross/scripts/katzi/analyse_echo_plate_usage/test.py,sha256=BHUW9JH16YX3r7zJzRPirXg8FzNrBagEyy1U-wNcTXg,1405
crisscross/scripts/katzi/evolution_analysis/analyse_evo.py,sha256=lNNJsFnwQAPUSwmP_w3-grkfZZT4D501dUEy3uFCwNk,5232
crisscross/scripts/katzi/evolution_analysis/file_renamer.py,sha256=ixAju2BR4JOBcVWEH-W6TaASuiZfAMpvsaw7-0IU1sk,1704
crisscross/scripts/katzi/evolution_analysis/plot_distributions.py,sha256=p6bBXiVjgl30_7h8gz2RE_00cuirOUKTkHYwC7hwl0o,6455
crisscross/scripts/katzi/evolution_analysis/plot_things.py,sha256=jZqx5Y4QHEa_KzdYL9sFnpK3-vHVSj42x11ctudltqQ,12057
crisscross/scripts/katzi/evolution_analysis/plot_things2.py,sha256=BpwhcjKUipAtUlMOXnKBLg33Ejqbvp6jAUDmIWVVg1c,5537
crisscross/scripts/katzi/evolution_analysis/run_evo.py,sha256=EugSDH8AFC4GNgou45f6w9eODNJl4elwajPOrINfPj0,3791
crisscross/scripts/katzi/kinetics_simulations/nucleated_growth.py,sha256=t4t0vtCPKLQ9h0paIaTbe0-AO0fnrDWkP-vScOra-9o,6105
crisscross/scripts/katzi/test_C_code_eqcorr2d/verify_results_eqcorr2d.py,sha256=XZZkWutDQFrQF5KINW-iR28CIhe1e_H1ZL6tI-s_keA,6792
crisscross/scripts/katzi/zeta_sizer/one_global_tau_fit.py,sha256=jWSE3K8zAoQjiYrxJjHHMXxx15NdSV05i1YJipzOYZg,8865
crisscross/scripts/katzi/zeta_sizer/prototype_fits/combined_melt.py,sha256=kWeMfyKTqqXxOuUPyesWN5bFjFSCREPrgdsGNrdo_Og,6045
crisscross/scripts/katzi/zeta_sizer/prototype_fits/find_melt.py,sha256=RSFO6sYpq45krERUzJl-HpL8lZ1d6k6BBTFT6DGtzdQ,6120
crisscross/scripts/katzi/zeta_sizer/prototype_fits/find_melt2.py,sha256=5hSw7mDfW9rgHIv9zQwo_vr3K35RvqqTliJgStVq11o,5274
crisscross/scripts/katzi/zeta_sizer/prototype_fits/find_melt3.py,sha256=sbJB8_-iyAWmyf_dDPQaoNTIr6-SZMH2DyMiN4vzSJw,5846
crisscross/scripts/katzi/zeta_sizer/prototype_fits/melt_vs_valency_fit.py,sha256=whMJ2i61vOTD-GlXml9uft0VIL2VfK3hPjNeAehW0a8,10071
crisscross/scripts/katzi/zeta_sizer/prototype_fits/one_tau_fit_per_set.py,sha256=5dZZuZhzgzfLB7CH4EO454-CK2sMLsAtC0aINOJuBZY,8927
crisscross/scripts/megastructure_designs/3d_folding_cube/CB015_echo_prep.py,sha256=RlwjIjLYBjWezHhjRAK3Bu8yKMk4W-L5K4vHn5xfU6Y,3888
crisscross/scripts/megastructure_designs/3d_folding_cube/CB015_handle_evolution.py,sha256=WHF9zaC6oDEW71Y4RMB3r1_OjUOZoujhNe3iYjLc0Uk,2112
crisscross/scripts/megastructure_designs/3d_folding_cube/CB019_TeenyDie_EchoPrep.py,sha256=VU9fE9cXWao3fk1MawR75tkw5YBF_XofBLgMmiC1ILo,4553
crisscross/scripts/megastructure_designs/Serpent/echo_serpent.py,sha256=9x6MOlWMQ8ejwRdctIk3ckHB9g-_PdIw9iaePtZf128,9110
crisscross/scripts/megastructure_designs/antigen_presenting_cells/CAPC_v1.py,sha256=GJosdCtxUC7dCnI3v1sEEGCm3HKfWKKU5koGGtI5s5k,6869
crisscross/scripts/megastructure_designs/antigen_presenting_cells/CAPC_v2_hexagon.py,sha256=3gM9lGOkOjjz5eKAuYD3IBtk_i1klT1CtMr1GICCeQM,9184
crisscross/scripts/megastructure_designs/antigen_presenting_cells/CAPC_v3.py,sha256=OaxXuuvig4Xvxd2NqjhKyKEtcG7zR-LfzdGokediQiA,3074
crisscross/scripts/megastructure_designs/antigen_presenting_cells/capc_pattern_generator.py,sha256=rNPR3nYccysj6QBw7FoF-ZOphEbqQTyXtcUPNmW2Hgc,5133
crisscross/scripts/megastructure_designs/antigen_presenting_cells/handle_evolution.py,sha256=9wmdV9Bfs5e0rrqSoEb-DMUsiMuJhfpcM6kpOPJcmt8,2267
crisscross/scripts/megastructure_designs/antigen_presenting_cells/testing_antibody_cargo_handles.py,sha256=VXyCbnY2dQXbaba-5GSp8Z3mY8eG1j6zOwlJCiyW7fc,17981
crisscross/scripts/megastructure_designs/antigen_presenting_cells/validating_new_workflow.py,sha256=yzN8HNfNUuNObFAvlFP7RCiPxWxxEtRyt33fmIbXKk4,5843
crisscross/scripts/megastructure_designs/antigen_presenting_cells/preliminary_work/CAPC_v1.py,sha256=jI2-e0xtuWDwv0R2Fi_QGiIMl96LHJriEzNwxnWln-U,8173
crisscross/scripts/megastructure_designs/antigen_presenting_cells/preliminary_work/H5_bart_edna_handle_library_generation.py,sha256=56USuLHttaUo18g6AwaBBUPs60KI6SVm0cBesuKpjdo,1913
crisscross/scripts/megastructure_designs/antigen_presenting_cells/preliminary_work/K99_designs_v2.py,sha256=13zqIn87gIgJteiMhyMMcTAUAtLagmodQZZt-XwXyn8,4795
crisscross/scripts/megastructure_designs/antigen_presenting_cells/preliminary_work/creating_designs_for_fellowships.py,sha256=YcCqYrg92M9tnSaUceB6oaxBEBFqMYRqj_kYYLi6yQc,4815
crisscross/scripts/megastructure_designs/antigen_presenting_cells/preliminary_work/design_display.py,sha256=dicMQAzLQJsEkaWWrIIRaPsDa_1ku0wRwaJCTOeE610,3711
crisscross/scripts/megastructure_designs/bionwire_collab/design_v1_visualization.py,sha256=_rhFWibZQcaht9FbTQfMjXWVonRh3khKXYAwhuTpLq0,3913
crisscross/scripts/megastructure_designs/bionwire_collab/design_v2_wider_trench.py,sha256=mVwnv2OCrtHAvap2JyWolfv9PjOcz7PSB_UtP6Cv_ac,10184
crisscross/scripts/megastructure_designs/bionwire_collab/design_v3_rect.py,sha256=N17xLDklb1iPQIszpC1IqPyoKi__Z2lLRELyR1ffQAo,3279
crisscross/scripts/megastructure_designs/bionwire_collab/quick_evolve.py,sha256=m1rJvEGAneOTdqAIg9pacuZ37shbSieXR_nQXLcGguQ,1715
crisscross/scripts/megastructure_designs/bionwire_collab/unfinished_designs/crossbar_example.py,sha256=VICwKBlBB8RhSlbgvbljF8XuIjnZFOn0vmLh4qqA-Rs,1351
crisscross/scripts/megastructure_designs/bionwire_collab/unfinished_designs/deep_trench.py,sha256=I9ii2xUF6a4xkUD__kgAGWkt6_rkFmrrMOiiBxjkiHk,840
crisscross/scripts/megastructure_designs/double_barrels/cis_trans_echo.py,sha256=chcxblTwrYvzgtsqHQkR5J7EOmuYqqRvZea3UKhWVPY,12258
crisscross/scripts/megastructure_designs/double_barrels/db_heart.py,sha256=hTgt6ls4IqEG4ZQSqB2e6XXtsQaJAyTMXLzHQ-4JG48,5634
crisscross/scripts/megastructure_designs/double_barrels/db_ribbon_echo.py,sha256=f6scqypD3V0gNtWbNKj8BhJpKUYo00nv0BvXegvU_Z4,7788
crisscross/scripts/megastructure_designs/double_barrels/db_seeded_zigzag_ribbon_echo.py,sha256=eMHeuym01GZBu412fQaRaTD4IJ73MfmsbfoTKJwkPus,6930
crisscross/scripts/megastructure_designs/double_barrels/db_seeded_zigzag_ribbon_echo_try_2.py,sha256=OLzrdlUYqnlki9DfywUMnKLHh8JGJmAEr3JnWFgIrSM,6926
crisscross/scripts/megastructure_designs/double_barrels/db_zigzag_ribbon.py,sha256=TWE6CoQWiR7fBhpi9DcP_-FQY-T_xjc6uoyoHeqiJ44,3837
crisscross/scripts/megastructure_designs/double_barrels/evolving_db_ribbon.py,sha256=68B_knbKtXbcebEBMCLN-G_0hxB9Jyk7OHrF_ryIoAE,8414
crisscross/scripts/megastructure_designs/double_barrels/quick_evolve.py,sha256=o1fN6OwSlZh6ZcV-PNDj2HOvWJhM4rODrq6wnetk-70,1834
crisscross/scripts/megastructure_designs/double_barrels/setting_up_cis_trans_experiment.py,sha256=4S72ld56yT79BVjRUsOkVgRZ-e0nAu3GFdyLwE7T6To,12933
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_1_2024/3D_stairs_handle_evolution.py,sha256=TN_Znvv2QmNY_pe3CCCxJkrP6CpTtqCgm0OuW3acUZI,2207
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_1_2024/7_layer_viz.py,sha256=xw-DHcLkm1EiG82CvxGhEMwGiv-Gg0kN0SOp-cilMdM,1525
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_1_2024/design_setup_and_visualisation.py,sha256=Xpkv1B6oNUFeiN06SVBq3_2HMOqNfRuEvLOOAW0WVK0,2542
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_2_march_2025/design_setup_and_echo_export.py,sha256=Fl9vhkeS2CCQ4_Mxj8K0xAXVMu9mYKPdjaUD2IfZgfs,6236
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_2_march_2025/echo_combining_script.py,sha256=IpUCO033XiTsNrhwBwG-ZuZ6tmyM1u-F3DRafmi1YRM,1103
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_2_march_2025/evolution_version_2.py,sha256=XuelBLyIEw_hEWdzdPw4B7-bxfkj98_JixKEi9pp4GE,2710
crisscross/scripts/megastructure_designs/early_megastructure_designs/3D_stacking/version_3_april_2025/evolution.py,sha256=vTvGz2ZmkfdoQLN5323GL4UMQbw59tihBGEOEQS1dbg,2747
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/basic_designs.py,sha256=1JVha7BB5Gcgloi75aCY9zUJAKf1bwfbeDX8ta1Cdis,12187
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/basic_designs_v2_incomplete.py,sha256=0xzeryACksJSRU9MbrhfTac7cJmsPsr4pnz8JhAjsqk,12841
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/basic_designs_v3_no_knock_in.py,sha256=xPir506Z1RvM3ke0o71yoG3of7Q6O9Z5_ZZwoP7UmC8,11535
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/basic_designs_v4_extended_trench.py,sha256=JBepJrM0BCRwzVdvG_8-IIxrP-ikaWJBWr5fN8O9y_M,14254
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/basic_designs_v5_mixed_gnps_nelson.py,sha256=gcrlVKmwesJROX_o77xWw_dDqcuGaeqXFNyTtZ0NsjU,15436
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/basic_designs_v6_multiple_reactions.py,sha256=I9YuEVfBELm1Dj-mCeUDnqTz7qriSMlf9FuFb4blEH4,9387
crisscross/scripts/megastructure_designs/early_megastructure_designs/TMSD/split_design.py,sha256=XePPBRBqYKLFOtm0Y281F_4HxOJ4glWcKLrUUg0gADo,6571
crisscross/scripts/megastructure_designs/early_megastructure_designs/glass conjugation/design1.py,sha256=5_oD8buIQcBOG1987M_2EE6dy4Va6RAwflNkDQWSLBA,2214
crisscross/scripts/megastructure_designs/early_megastructure_designs/glass conjugation/design2.py,sha256=fXgb__WFhaFEDTDav2l2VZMeT_GAuto1BpVBPj0bkMg,5436
crisscross/scripts/megastructure_designs/early_megastructure_designs/gliders/glider_design.py,sha256=627mCHFxwbKnsf-Qg0lTyMNqKg4Zv-Q11FQjGyaiINs,6060
crisscross/scripts/megastructure_designs/early_megastructure_designs/gliders/glider_megastructure_creation.py,sha256=ongvLB-0G05nPSNtWwiB_A0X5NG3NU7-DobExyF0LRo,5553
crisscross/scripts/megastructure_designs/early_megastructure_designs/gliders/glider_v2_design_and_assembly.py,sha256=z577W6t2apsw5ExfzQft2jhXPQvGr0571VuRMD_EAQo,11939
crisscross/scripts/megastructure_designs/early_megastructure_designs/magnonics/basic_squares.py,sha256=FDUN8gubBCFOjwtojPHMkhCAoBounFaZatY4Kt6-MRE,8600
crisscross/scripts/megastructure_designs/early_megastructure_designs/magnonics/basic_squares_with_new_library.py,sha256=uMlK3UNrkUv5k43RsbKeuKviNJxqhK_H6EGxVFWF6GA,10254
crisscross/scripts/megastructure_designs/early_megastructure_designs/two_point_bead_purification/design_iteration_1.py,sha256=9YdEYTXlwUBNvu9Z_7lmnF3HGjHU351HuaMEa5jKBh0,6124
crisscross/scripts/megastructure_designs/early_megastructure_designs/two_point_bead_purification/design_iteration_2.py,sha256=IwLcFGbfPgTNa8Ul2ak1D5TxvCo_67z2Ffth4XTaQtE,5584
crisscross/scripts/megastructure_designs/early_megastructure_designs/two_point_bead_purification/plate_generation.py,sha256=DM07lPHDv_scwHdaUd1zTpgMB4okxXRj7cs4Jg2wR2Y,5731
crisscross/scripts/megastructure_designs/fluoro_squares/fluoro_assay_square.py,sha256=-Fx97aELBCuBa6Hqb_8caYa3TOCa58M7djNejR_-XXY,4748
crisscross/scripts/megastructure_designs/fluoro_squares/jaewon_nucx_fluoro_march_2026.py,sha256=vzh4hJtIYGSdj50AhoWv-zIFdjloBk3KH5mezgHJsbQ,2959
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/cost_calculations.py,sha256=ymGgD4wU2usfk3CHM1gFeLgg2yAebe4Rfypy3_8TEXo,2427
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/design_evolution.py,sha256=83Te1GljG1cVqH5G9D-6l-8X1Z4KgoDf6YQmBTFmNuI,2921
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/design_prep_and_echo.py,sha256=KyAeOjfjOb_irjX_Glqo6-s2zdEG578p5d9N0611sSQ,6334
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/echo_combining_script.py,sha256=hUPT3aHfS_v0gRs3Q_da2jEDmRvTGFQHd0CydEY07Do,785
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/experiment_1_quick_check_hammings.py,sha256=zr_nSeCVG68PczLYWF64k-Dgf0GSR8jVTVSl5SBxhjE,845
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/experiment_2_sunflower_design_prep_and_echo.py,sha256=PbUXYTI0Hz67wqikmJb5aybnwU_Kb3id7ZRRNXXZJnA,5350
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/experiment_2_sunflower_quick_check_hammings.py,sha256=T-hqui7VHX798tAj8AJhPc5yQRk36LuWzpMbQo_R8HI,1015
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/physics_score_exploration.py,sha256=yd3VrTmOLqoG5rcDvPRkm1gw_qMn_1Ura96mkIqbpRQ,10976
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/ribbon_design_prep_and_echo.py,sha256=H7Qk5kBaPuJiYyzAs47YohaXtYrWFlu3iaUS1dbdFJI,5056
crisscross/scripts/megastructure_designs/hash_cad_paper_designs/ribbon_evo.py,sha256=5UOe9h2ehdSiNFI9Khmb0qFP7S-Drpj46dYjA_ICiaw,5998
crisscross/scripts/megastructure_designs/miscellaneous/echo_check.py,sha256=E4I0vAXEwqqdlqgrNLFJ3EflF-Mjm0OLFlg1lGtAZ4s,1880
crisscross/scripts/megastructure_designs/miscellaneous/quick_2d_ribbon_test.py,sha256=J-_RVOLLKy9x3p29mdmEtz3zrSPJj9Dlg9ntZuebL-4,5222
crisscross/scripts/megastructure_designs/miscellaneous/quick_sierpinski_patch.py,sha256=F3GPf2hv1EcpNsexirl4ifd2tKTzF64KgFVzkhiBWDk,2654
crisscross/scripts/megastructure_designs/optical_computing_collab/calculating_crossbar_placement.py,sha256=kEILqkqvKvbZ0OIqkbQloBW_dJMHkFMLur9UrvS9t-Q,3626
crisscross/scripts/megastructure_designs/optical_computing_collab/designs_nov_2025.py,sha256=qdWZJ_YM1QCtkwMZi0NAbzGmGkc68FZvN7-S5KIgt2A,11399
crisscross/scripts/megastructure_designs/optical_computing_collab/extend_octa_plate_with_octa_handles.py,sha256=NSSC8PMvhWI0Ga2auBolTGxClK6p_5YQtK12hnm4R9o,5302
crisscross/scripts/megastructure_designs/optical_computing_collab/generating_crossbar_handle_pattern.py,sha256=TJ0UHuLu-ORrokL42TmUlfad_u8uS1e4MSJxQ2oNeoo,2680
crisscross/scripts/megastructure_designs/optical_computing_collab/nelson_quimby_mats_refill_sep_2025.py,sha256=G231UgIX5OmfzBoa7-gwHlnQEUyU4TQpQL4urkvw4tk,3606
crisscross/scripts/megastructure_designs/optical_computing_collab/new_designs_june_2025.py,sha256=IgNuOsyijhgOUqSKcezV4Bope9qmrzJsnG-g7fM5VXc,5680
crisscross/scripts/megastructure_designs/optical_computing_collab/new_square_w_double purification.py,sha256=sk6kqxOkLZ6B_OxzvqFU1jWt7q_IU2h2ebNIs3qhAv4,4725
crisscross/scripts/megastructure_designs/optical_computing_collab/preparing_more_y_slats_with_h29.py,sha256=PjLjZ0JSV_4Yh6ohEqGZgnei918MHhRFWzxtwMjYg7E,9182
crisscross/scripts/megastructure_designs/optical_computing_collab/quick_regen_jan_2026.py,sha256=YA5Zgh3gwXmvcuaIJqtFytEPluVryPLu2Rfc5FyP7vs,3270
crisscross/scripts/megastructure_designs/optical_computing_collab/square_design_for_optical_computers.py,sha256=jzAReOZVSIGvwSFE1YDqe50iVEHtgVTgPU1ERcnSPTI,14836
crisscross/scripts/megastructure_designs/optical_computing_collab/standard_design_with_2_step_purification.py,sha256=7eQM6ueJkYYarLPywJz7eKRdcb1XVkYgrekoqq77HNc,5862
crisscross/scripts/megastructure_designs/optical_computing_collab/testing_octa_pattern.py,sha256=Cwk8_dCoIaa4wUAJGGrqQUyQYoOPA03njBTX1As96gI,1952
crisscross/scripts/megastructure_designs/sierpinski/echo_generation.py,sha256=8WU3289cYKPCz72of-WuZW3WlWoCNCIukLS0aqlyAFU,6471
crisscross/scripts/plate_handling/attach_handles_to_slats.py,sha256=cjDgrpX88tmJ382be29T74HZ5dVkuWUvbS6ptAS6aVA,1666
crisscross/scripts/plate_handling/combining_seeds_into_one_plate.py,sha256=ihSf5d1Sy2T-QJ0I_JmPQeR8HuETYr5BIT0rjCCysdE,3267
crisscross/scripts/plate_handling/convert_idt_email_plate_into_2d_format.py,sha256=ULU8bEv5qbTB1OqsW7zRxBqCgfN5QZqsbHvcAykJafY,1814
crisscross/scripts/plate_handling/convert_src002_into_src009.py,sha256=XykSdU47VyKzFzzPpz7Debhux3-812uSb9BFwKfISrs,2848
crisscross/scripts/plate_handling/create_double_barrel_seed_handles.py,sha256=0aijcOFBKpcrEe4QpE4nHy0Ansj2xNl1PKheNzIrHKA,2348
crisscross/scripts/plate_handling/creating_combined_p8064_seed_plate.py,sha256=dQeGGlsuRUO26c2J4oaShxh3YZJ3VdqP8g70nigeeaQ,3882
crisscross/scripts/plate_handling/creating_new_assembly_handle_plates.py,sha256=0oTgbwOgGYSjgWAIrGdSx3PKU0kcfFhTCpDFddT1MUg,3354
crisscross/scripts/plate_handling/generate_dna_paint_plate.py,sha256=Gl0BRjBDgVe-BuHqq9MNhvf5TxeJpQKv5u4wo_z9pHk,878
crisscross/scripts/plate_handling/gnp_concentration_tester_designs.py,sha256=JKyAqYMwILv9fPKBNU-czFA2xW0X0zF8_6zBrZk8YYs,7739
crisscross/scripts/plate_handling/prepare_plate_for_resuspension_with_liquid_handler.py,sha256=Nd7la0NQ2Jma4uaswWCV_P4Oc2ecQqdq6SHvQOzHVwU,5060
crisscross/scripts/plate_handling/regenerate_handle_array_from_echo_commands.py,sha256=YhF9Mi7lNFeWDqONdtQ2c3HezwLHJDn52iPCvSoWFAQ,3696
crisscross/scripts/plate_handling/repopulate_plate_details_from_idt_order.py,sha256=tekOKmmPYynaZjdUBvoxOvyy7Bk4Jzjx8Sj3t7rg_K0,885
crisscross/scripts/plate_handling/src_007_refill_script.py,sha256=_C2sdVjLE69J6FKd2bHAWyvh85Vd9c_MM4RyUJzQ0e4,1374
crisscross/scripts/plate_handling/sw_src007_plate_generation.py,sha256=E4RSqhAC5TdfeRaFCfYx0ShsSkx3dD9dYsZ7cpriM7g,3144
crisscross/scripts/plate_handling/testing_crisscross_animation.py,sha256=iID5vEDQ8OuC9W5ATSqVIiE7XAX6haVJbepFnWeYips,5234
crisscross/scripts/plate_handling/testing_triple_layer_designs.py,sha256=BpIUH6LxrVl0pNI72wfjG5tABswvvvb2_g3CiTOCY7Q,2005
crisscross/scripts/plate_handling/update_old_seed_to_hashcad_seed.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/scripts/plate_handling/new_handle_library_generation/TT_no_crosscheck96to104_64_sequence_pairs_flipped.txt,sha256=45c_VR2QywGEi7H5YlMna3-3G7GMmDQQ2183UxQBjYU,1088
crisscross/scripts/plate_handling/new_handle_library_generation/analyze_idt_plate_cost.py,sha256=GxbjaLtiD-KpbUwnkNJw92PsXttAiUVDSY7_JJpz878,2089
crisscross/scripts/plate_handling/new_handle_library_generation/create_working_stocks_from_master_stocks.py,sha256=5qfnTDtxWpaAGWHqXI7EUqbgJaKP3iQkXAvD0DeBFfY,1480
crisscross/scripts/plate_handling/new_handle_library_generation/handle_library_resuspension.py,sha256=naMhUxz40fa3KzGqLFlb5k9-lsOixUU-Qr2H2uQvVcI,6089
crisscross/scripts/plate_handling/new_handle_library_generation/hist_check.png,sha256=tRbrjpa3OLw2FoARJBQ51F7EJHR2jg8s7VG0DZCEg4Q,46141
crisscross/scripts/plate_handling/new_handle_library_generation/new_handle_library_plateify.py,sha256=fdHQ0p8EDd3JKfIDyamRwjxYtmGQEz6dK_c98A4c0f4,6949
crisscross/scripts/plate_handling/new_handle_library_generation/new_handle_library_quick_checks.py,sha256=jITAsDLwPzNAePTvyG4Phtn_4n7WaiLbR2CQnZo-Ir8,2695
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/256_set.txt,sha256=jgRTZhnWxYXpSQY9k629qMQRnZBdMfKNX4CmM_KlYt0,2302
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/chris_handle_distribution.pkl,sha256=dJYngPrgHmRgBv2zIDyaZa8ThUIn4nK1rjEIhi_GRzo,5190
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/core_32_sequences.pkl,sha256=Kv0ks3S9qCoEqATfJUCoavkQX1t-uuD36e6fW7T9sVA,664
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/distribution_generation.py,sha256=cZnir2_Lp_-Gy4ASLQOYse63RjaxxtYZ2OTDO9wtPRk,1475
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/gc_3_4_full_sweep_energies.pkl,sha256=DpMnkrEDDojslU-D6sE-fLuqKsUiNx7qKkLIPbAs2hg,170312
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/generate_all_binding_energies.py,sha256=XAN8MPPUCdKLMD_eS7WeZ0GUisAecNhaK1x8iDSdTZQ,1312
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/handle_antihandle_binding_energies.pkl,sha256=FCCEIzQ5N_qgnoNWo3G_HuTfluF_n5NPkci4MyAwcMM,24801
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/handlenotebook_katzi.ipynb,sha256=z_g5pUUMK37wnk_fv8VcJSXLD-JlEPU2cmU1_zuLsfs,332173
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/nupack_testing.py,sha256=gZ8jUw3KJ1AwxsGWR5EgGhrwuY7RGQZqHOOJpLFoe4w,2145
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/seq_sampler.py,sha256=BRXfjuHUPTn2gWa58EJYZDjnQUrK1Svw2_ePoU6rL-4,1408
crisscross/scripts/plate_handling/new_handle_library_generation/matthew_handle_energy_prototyping/test_2.py,sha256=mIwrg_mXaOT_m5WqbWQT4yYelIMKu9EwIOmnR46p5Fo,4096
crisscross/scripts/plate_handling/plate_resuspension_scripts/2_vol_plate_resuspension_assembly_handles_nov_2025.py,sha256=lDCmOTSxYb11vWlVc7gee5LYaRtE6HPDBGHDlr4ZnhU,11886
crisscross/scripts/plate_handling/plate_resuspension_scripts/general_2_vol_plate_resuspension.py,sha256=jVQLVOh0QuoN2R6s8qTmG3cMfhGCgMXQCV8-0IVlamU,2161
crisscross/scripts/plate_handling/plate_resuspension_scripts/prepare_plate_for_biodot_resuspension.py,sha256=rSB_jIz4Zm78pPv35QaDc5Fa9e-hsYWazh0ahsDH8r0,1873
crisscross/scripts/scratch/checking_sierpinski_evo.py,sha256=xJB7YKWzSTSLbL3ZkK4z-Xw-0PvkJdIJmId4BepPp_g,2655
crisscross/scripts/scratch/read_idt_export_obfuscated.py,sha256=EdbySEPz5Kw0eLngnal1CaU8q7TRTHtXEGL1RKQ4cMg,677
crisscross/scripts/stella/SM01_hexagon_battleship_v1/square_example_script.py,sha256=DAItuxON9LCNv_gP9Et-LqoNfVkTFZ9u2YFZBMFLBeE,2375
crisscross/scripts/stella/SM01_hexagon_battleship_v1/test.txt,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/scripts/stella/SM02_battleships_with_cargo/SM02_battleships_with_cargo.py,sha256=v5Oboe6-lT9x5-eE7v36A8pbm1ZhFAFriUi1W2Wj2ms,3172
crisscross/scripts/stella/SW099_kineticsweep_script/kineticsweep_slathandleselection.py,sha256=vwBXxXCqpJoNUACDzyAPjTgQAfKvtGIrq4mf5JXiaHw,4181
crisscross/scripts/stella/SW101_handleaggregation/ handleaggregation_echoprotocol.py,sha256=DCZrLz8A9xtqMiCyck-TZgbH0LzAxR1vubpk-dyHDDY,4220
crisscross/scripts/stella/SW102_finiteassembly_repeatingunits/SW102_echoprotocol.py,sha256=9UmE_mN7EuuLVewGh11ckBs-FPv5nZ9up2uHWWFnEdo,5266
crisscross/scripts/stella/SW102_finiteassembly_repeatingunits/SW102_handleselection.py,sha256=Ae6CWYNJpjAQBGpE03ChTM6gepIBOwsLz6ui_O4yvGk,3092
crisscross/scripts/stella/SW102_finiteassembly_repeatingunits/combine_magnonics_and_repeating_unit.py,sha256=GJrApDmDZMS6iZ7w9Yls0b7yHaaW76Ev320RxVxyE0M,1640
crisscross/scripts/stella/SW105_psoralenslatduplex/psoralen6hbduplex_make_echo.py,sha256=SnkyUoFRPleA4To-LQY8b1GPKI8B3mYDcRb9lbYh8gw,2331
crisscross/scripts/stella/SW110_UFribourg_Design1-4xCNT_Design2/SW110_combine_echoprotocols.py,sha256=mMtGuKm0UXeVH6Av53ExbKVHY2ij2rpX17cs4B5RMrQ,1107
crisscross/scripts/stella/SW110_UFribourg_Design1-4xCNT_Design2/SW110_echoprotocol.py,sha256=cvQryOSLTo3JAKwldEf7a5iTUYoW9VTjS50S9PxsPVA,5008
crisscross/scripts/stella/SW111_largefiniteassembly_repeatingunits/20241030_testpartialareahamming.py,sha256=buImi9JfIJJuLFEg618HGFm1HeDUU7LbIsy83hOsub4,7583
crisscross/scripts/stella/SW111_largefiniteassembly_repeatingunits/SW111_combine_echoprotocols.py,sha256=8nEwc4Xe497IhtTteHmqCCvGBg6f5N72mB8oqVC68hY,1099
crisscross/scripts/stella/SW111_largefiniteassembly_repeatingunits/SW111_echoprotocol copy.py,sha256=OSf-2WF0dftxh9C3c9df6PPMxTfxWfk7Q4AqxVJi9jA,11062
crisscross/scripts/stella/SW111_largefiniteassembly_repeatingunits/SW111_echoprotocol.py,sha256=QlP7RiDqoIcxyBOA1gleAMyde24cMn3x5J55E3mCpA0,11032
crisscross/scripts/stella/SW111_largefiniteassembly_repeatingunits/h29_handlearray.xlsx,sha256=bepbATtF3euatWk4_K0ixqPz-ZcoVOmUMC8f-5gKcnw,8813
crisscross/scripts/stella/SW111_largefiniteassembly_repeatingunits/true_mighty_29_square.npy,sha256=wJKh9n9cGGyGH5irgS9JdOSYotVb37T4VEWRsKcWUOM,4224
crisscross/scripts/stella/SW113_psoralen3primeTT/SW113_echoprotocol.py,sha256=PdiJtM2fVgp6tjMqGtkZM9-BxBbmC9BuPh6OorvQxBI,2778
crisscross/scripts/stella/SW114_psoralenunitsq/20241216_limitedhandlearraysquare_echoprotocol.py,sha256=aFPN2iUdtbQPOcpIjJZtawhCRvOhsyJnW46AsqtNvgU,4046
crisscross/scripts/stella/SW119_newlibkinetics/SW119_echoprotocol.py,sha256=rv_qKefWSIRR0kJbpAqP0vC6wSEohW-2rykNMENBTJQ,8787
crisscross/scripts/stella/SW121_spuriousassembly/SW121_newlib_spuriousassembly.py,sha256=uIkhfIKFO-XyYAg3SgZHRfaZ9PTy2ytwvPOlVG866oE,4914
crisscross/scripts/stella/SW121_spuriousassembly/h29_handlearray.xlsx,sha256=bepbATtF3euatWk4_K0ixqPz-ZcoVOmUMC8f-5gKcnw,8813
crisscross/scripts/stella/SW126_bionwire_wide_trench/20250324_square-handle-test_echoprotocol.py,sha256=ZYXaZ7rFvHzNJoywN6tlPiYrUifMosjTwLjhCBmjAhE,2745
crisscross/scripts/stella/SW127_UFribourg_Design3_8xCNT_4handletypes/SW127_echoprotocol.py,sha256=2G64-FwWqQTyWI_UXlkgBotoxu6cMViItfhsNOs_tYQ,2464
crisscross/scripts/stella/SW128_UFribourg_Design1_aggregationtest/SW128_echoprotocol_design1.py,sha256=m2JiV3BkqGJcAxqiBE7IAXDJoafNVqafEXEzsnWvlh0,4505
crisscross/scripts/stella/SW129_hexstar/design_setup.py,sha256=TGJJs_kIws9o4fa8PiH2hwizI4c4C5JgQZMj4kCxwvA,4194
crisscross/scripts/stella/SW129_hexstar/handle_evolution_server_prep.py,sha256=SNfSTEQNKcm0prSGxz7WUaFeWMhXLIlfqXxWmHUNQHk,2758
crisscross/scripts/stella/SW131_bionwire_square_trenches/SW131_echoprotocol_separatetrenchslats.py,sha256=RQYMTp3hZZWnvJ6KOVwtd9P1j34FJz34POR4pd4ajE0,2777
crisscross/scripts/stella/SW132_repeatingunitassembly_epmotion_smallscale/SW132_echoprotocol_script.py,sha256=-pNHftcEIGSUJkWmPEhlV8R9hstKICg5UGSHG264QPM,3481
crisscross/scripts/stella/SW134_seed_side_growth/SW134_seed_side_growth.py,sha256=hBxMUd0YLMBUULWAiMaJsMyu6oT-t6El8IK134XBE-4,3322
crisscross/scripts/stella/SW135_minisnake_kinetics/SW137_steps1-4kinetics.py,sha256=r1XgngAxKg6kKr7Vmmdda0vYAjY4u3zVZpJpfbvMRdU,5200
crisscross/scripts/stella/SW135_minisnake_kinetics/minisnake_kinetics_tests.py,sha256=m4Hl792NhO3ojXKJP_GP55dqtWgk3Hv2MPvy-OK8heo,3525
crisscross/scripts/stella/SW135_minisnake_kinetics/test.py,sha256=hRlXx133tkSqqQf-o0d2uh1dMO9kjtCn3hhU4oU9HRc,84
crisscross/scripts/stella/SW139_BioNWire_Aarhus_DTU/aarhus-square_dtu-rectangle.py,sha256=FydphO-Fts-tsPj1DB4BSQqt6hvfX4aEfhmTuO3nnkQ,5466
crisscross/scripts/stella/SW143_SW146_SW149/SW143_SW146_SW149_generate_echo.py,sha256=p3m-zXIlTJcfdWOB-l4TOGfdSThSQ9iLkAUZRxt-oJ8,9516
crisscross/scripts/stella/SW144_startertestplus/SW144_startertest_plussign_echo.py,sha256=qgqh3sDldu86AQN6dCn2kdK0FRpV2gzlH5pvKslocAA,3387
crisscross/scripts/stella/SW145_bionwire_aarhus10nts_square/SW145_remake10nts_square.py,sha256=QTh1-wXC2IB8cwRqctvaDy4wJbgFTYn5ZXveebhkTn8,3386
crisscross/scripts/stella/SW152_purificationhandle_sq_longsnake/SW152_purificationhandle_echoinstructions.py,sha256=SuJ4CvvCktNuzxuAmU0q0DeshFgKJpDxqIZ1I-_hMo4,6154
crisscross/scripts/stella/SW153_repeatingunittests/SW153_handledesign_echoinstructions.py,sha256=VNxuvZdsrmYCfIhAA3p55MLnsop1CM4cz0srPkYqIGE,5428
crisscross/scripts/stella/SW154_hexgridkinetics/SW154_hexgridkinetics_echoinstructions.py,sha256=bqGyr3iVhxTcmWq3BKXOqAobBusPJ6RNrfIP9vito4Y,14680
crisscross/scripts/stella/SW155_repeatingunits_largescale/SW155_SW156_RU_hexkinetics_starters_part1_echoinstructions.py,sha256=Tq9dAqXCuPF9B0sehB5ew5K-7lZ8qVkSiBkeHs07j70,12916
crisscross/scripts/stella/SW155_repeatingunits_largescale/SW155_SW156_part2_RUslats_fluorslats_echo_instructions.py,sha256=FFGGBKE6sx4SJYEqJegCa1weepZFYeX9cJiucVFQ4F8,13038
crisscross/scripts/stella/SW155_repeatingunits_largescale/SW155_repeatingunits_largescale.code-workspace,sha256=HM-xMwhxB-cX6m130hBnxhs6uhNpsk1jzL2iOSWaPDU,67
crisscross/scripts/stella/SW155_repeatingunits_largescale/transform_matrix.py,sha256=InJ0rVRKKe_Nj4Pn_s9GQcqlEs8RvKVGKiD5ziEJHjk,2493
crisscross/scripts/stella/SW155_repeatingunits_largescale/.vscode/settings.json,sha256=usanZkXEgGTxmOcRMBSSrOOGEQgx04HzO6aKPbaEe9Q,4
crisscross/scripts/stella/SW156_hexgridkinetics_trial2/SW156_hexgridkinetics_trial2_echoinstructions.py,sha256=rvTTSTOeWrX9HxJMvMmMz_YxyWUhfJj8aDke2mq9gvg,20127
crisscross/scripts/stella/SW156_hexgridkinetics_trial2/SW156_hexgridkinetics_trial2_morestarters_echoinstructions.py,sha256=htyIKZpIhNQlO2eU5EOVegeaKyads4vcO5XQdz2PWps,8223
crisscross/scripts/stella/SW158_bionwire_aarhus_doubletrench/SW158_bionwire_doubletrench_echo_instructions.py,sha256=xelRykW5jiUoUnQ2aIi0xGFQ5dXYp3W6odYo0dO4f5M,4205
crisscross/scripts/stella/SW158_bionwire_aarhus_doubletrench/flip_script.py,sha256=e-o895h35BM2ny7Av6gPTwoX6MKfJC_7KIx08IfVcLw,7456
crisscross/scripts/stella/SW158_bionwire_aarhus_doubletrench/.vscode/launch.json,sha256=5-9G0hUcQw4-FxDcd9wJDLKHvtVzUKdEda0sXfsxmGc,487
crisscross/scripts/stella/SW159_repeatingunits_singledomain/SW159_repeatingunits_singledomain_echoinstructions_justRU.py,sha256=2PJJka_hDZ80G9O8Ro0s1OTUdGMOxSPYkrrcLTsmdvE,5705
crisscross/scripts/stella/SW160_SW161_repeatingunits_UPonly/SW160_SW161_UP-3copies_echoinstructions.py,sha256=lmCNpxrXJkyJ821mtAme6zeeY-o_kHkd9_Df2Q65q_Y,5210
crisscross/scripts/stella/SW160_SW161_repeatingunits_UPonly/echo_commands/SW160_SW161_UP_repeating_units_slats_regular_echo-viz-plate-1.pdf,sha256=NwsWYcrf2ORAfPP1ejOOPqbLSVPqlDPu6_pRvS6odSs,64723
crisscross/scripts/stella/SW160_SW161_repeatingunits_UPonly/echo_commands/SW160_SW161_UP_repeating_units_slats_regular_echo.csv,sha256=f4uGOOkv1g-cHpoxIHVoSHAd5NGDYf017f_-QOK6kPk,329143
crisscross/scripts/stella/SW160_SW161_repeatingunits_UPonly/lab_helper_sheets/SW159_repeating_units_slats_regular_labhelper.xlsx,sha256=fEpSXo8uLRAhGY-9qd5I6m3aPFzr3697gF7zpGELLhI,9884
crisscross/scripts/stella/SW160_SW161_repeatingunits_UPonly/lab_helper_sheets/SW160_SW161_UP_repeating_units_slats_regular_labhelper.xlsx,sha256=qLymK5GiOK7RC-mId-oMaqih5XNo1ct4_Yb6rEOb4jY,9884
crisscross/scripts/stella/SW164_slatfoldtroubleshooting/20260430_SW164_echoinstructions.py,sha256=sy9aNvDQQD89H6ceP8go6Vc01il9UdNJ-AXw87TV0tc,5426
crisscross/scripts/stella/SW166_new60degstarters/SW166_60deg_parallelogramstarters_echo.py,sha256=TMhmLTRdxPFdXkSYMsXtiQWgpOJr_1ovoopauX-Cuw0,10854
crisscross/scripts/stella/SW168_SW162_90deg-StarterRUAssembly_beadlosscalc/SW168_starters_standardRUs_echo.py,sha256=1AeEshVN0Nml9lWAHggMCrMekQd_oh3EGnx9PNLl05M,6925
crisscross/scripts/stella/battleships/design_prep_and_echo.py,sha256=losA1ftAcRbVGwybTTXgilyanVg7y_I1M8LQR9wwsRM,3678
crisscross/scripts/stella/battleships/server_evolve_generator.py,sha256=sc8DA5fVXNTSofd_pP6vhVnwzMGHTREx13m39-1Y_EQ,2879
crisscross/scripts/stella/design_debugging/gliders_stellatest/glider_megastructure_creation_stellatest.py,sha256=xoIP96XkNg0ZFSFfzsjklpwenmmKenXOqlxx6v6LCD4,8695
crisscross/scripts/unfinished_prototypes/quick_plate_refill_script.py,sha256=BaQYLb3RPIFdrw0W79M_DiHulZbaQXrhrM6XcZ_4UPE,1369
crisscross/scripts/unfinished_prototypes/PAINT/hexagon_cargo_carpet_design_and_echo.py,sha256=IwJqiLXTm4Tmf2O5fIuXQiDcplEmNC7lo0Jwd6Ip2Fw,3789
crisscross/scripts/unfinished_prototypes/PAINT/singleslatPAINT.py,sha256=EuOt9tSgFC4PY53NxZLJeSw_PWVj4Aov52FtZ6VqUHw,4462
crisscross/scripts/unfinished_prototypes/PAINT/singleslatPAINT2.py,sha256=F9WoKKFNl0-TYEz4EYNP_PLUDNM89wfT7A9FbnOVDXU,4476
crisscross/scripts/unfinished_prototypes/PAINT/singleslatPAINT_combined.py,sha256=jcsenaJmxF_8YS48SQl-XP9w-wmtO020Xee2_eJBDJ0,3194
crisscross/scripts/unfinished_prototypes/auto_counting/convert_star_to_qupath.py,sha256=Salb7lEqtkxcZxqcMv8Dv-u5VzjjWg7itsO-FVM1psY,1541
crisscross/scripts/unfinished_prototypes/double_barrel_testing/add_double_barrel_seed_handles.py,sha256=XVCIgZI5-HnFh0sv6IV7Hr5Wca7RJoM8AZXkPaOu33k,3510
crisscross/scripts/unfinished_prototypes/double_barrel_testing/db_debugging.py,sha256=BXQymg45-6a2QZY-AcQQrLfj66VsuZLAsXNlqCjVdCQ,4263
crisscross/scripts/unfinished_prototypes/double_barrel_testing/echo_setup_v1.py,sha256=el8JUroYgAC0j1GC7zl4pCzZdUdPTsXg13Qnja2B27w,8147
crisscross/scripts/unfinished_prototypes/double_barrel_testing/evo_setup_v1.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/scripts/unfinished_prototypes/double_barrel_testing/testing_reversed_seed_placement.py,sha256=vHs0fUqbQln9e2F0Fyuwf1LC7VGeyHLGD215belkqkg,484
crisscross/slat_handle_match_evolver/__init__.py,sha256=9cxx1W_KjUXgdH9Mqgv0JyZnT-dbD_Jq_dQV2dJhSvs,7225
crisscross/slat_handle_match_evolver/handle_evolution.py,sha256=dJ-In0Gk6w1p2nhbLcFrVS-FfO7KsLTbfhxm0hm9PFM,29387
crisscross/slat_handle_match_evolver/handle_evolve_with_optuna.py,sha256=g55WUt9k-kNxXCJ66bExXtJF1ZGShp0PKBu80sPKb9M,2840
crisscross/slat_handle_match_evolver/handle_mutation.py,sha256=XWHgKa0dPvR640XlqHKQRYjIFdwqVXOBirz9dh5BB6k,13137
crisscross/slat_handle_match_evolver/random_hamming_optimizer.py,sha256=KHRCIFoHDUWZ75mXu4sv8Ps3vlwJG0XrajlgOCzh_tg,3321
crisscross/slat_handle_match_evolver/tubular_slat_match_compute.py,sha256=6t9_DBfEXEKoTKN10L9Qw9-Jsw8cvqv6pVOTtycJGKU,28009
crisscross/slat_handle_match_evolver/katzi_genetic_algorithm_prototyping/Katzi_Hamming.py,sha256=RccKVsQ35_X0FtOoJl0WbJHWWkIx14njiz6bRp3nxso,26566
crisscross/slat_handle_match_evolver/katzi_genetic_algorithm_prototyping/hamming_functions_multiprocessing.py,sha256=TLk-bCDeLoRhhxYDISDbUX8WwLv6W8t6D2qab6oMVl8,31613
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/dqn_eval.py,sha256=_yHI3t4xrw7u9DtsywZ3Fx_c0n5piVKeXPg8r8yYqbE,3635
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/dqn_optimization.py,sha256=-wMhTzjQcw535kp1JknwRwMqNYZTQ2e2kGvvcp9olqk,13173
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/dqn_optimization_v2.py,sha256=arQxEDrLdQbvulsDIO7YXNzGsqgznVRRbnC9r38O7b4,14318
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/handle_array_dataloader.py,sha256=xbNzrX1EZzHR1hmtAOjltCyR_RfxhoTKW38qkujedKU,1759
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/neural_optimization.py,sha256=tlbyGHWp_mntoQqh9eDMqsrpN9pKyuje4CkB9t5MANM,15658
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/scikit_tests.py,sha256=HfntsLa5yHhSbatn_MxuSpWoU2-yDtyfNOCGhUi66T4,2582
crisscross/slat_handle_match_evolver/torch_dqn_prototyping/torch_hamming_compute.py,sha256=30Dx_uW5tVNtILHq2pgNJK_6BxCZ8-WmqD5ErzR_Pmg,6269
eqcorr2d/CMakeLists.txt,sha256=3LVo06s68DLi6s93OiHunXS2AXElml16seFE0xf384Q,5000
eqcorr2d/__init__.py,sha256=Pcll7F_dnUreLoJkHRloDTGf_IbhX2O0Pzvoso35s9A,217
eqcorr2d/debug_driver.py,sha256=MefgWbPVxVxbFVZjAMDa9-DZsz3_R9SA6CX012F0ew4,7811
eqcorr2d/eqcorr2d_engine.cp313-win_amd64.pyd,sha256=zN6xSeA0Xvl-UPt-1msr6MvzurvtjygF7iopDlZfbzA,16384
eqcorr2d/eqcorr2d_engine.pyi,sha256=a4XibG1GZ07U8DZl8jOuYb-8vz_hsOuq4FhxBahXZ5I,600
eqcorr2d/eqcorr2d_interface.py,sha256=9TDhSFuFUVICobroY0Y0X5wA4UqoaevdHuksD46arsU,27756
eqcorr2d/rot60.py,sha256=B6FY1LuVU6y8kKpA9impLSXUvQtkHJE7bDoqaTb4Tlo,4212
eqcorr2d/slat_standardized_mapping.py,sha256=he78YBd5vYxUYKA2R4Uo3vCaOg1sMWucxWAEbaWL8fU,8810
eqcorr2d/c_sources/eqcorr2d.h,sha256=p30DPdkaUzkzy3gB1Es3Ye7_nsrUc7cfLVca3wgOAn8,2369
eqcorr2d/c_sources/eqcorr2d_bindings.c,sha256=PdeByyVhc1Wp-zRy2gCEllE9fFSHinslE7LGWHrNtwE,12163
eqcorr2d/c_sources/eqcorr2d_core.c,sha256=aHH4TCvoQ4wKIF_vewN4dH5fOICKUxDMyDPmNK3YtCA,5927
eqcorr2d/c_sources/main.c,sha256=sCm9_d_5N6lq6_kXBrFG_-cGQ6xIDBQQc271mWIwB08,1898
eqcorr2d/scripts/debugging_new_evo.py,sha256=NDuqIvt3Ci0IHhhgtIxvSPYyernlKkZW8JVJO5lEv3Y,2680
eqcorr2d/scripts/testing_eqcorr2d_interfacing.py,sha256=2PG8itx8vpalQqplZz2mKnqOZmEAT8ULCB1Zh0savu4,1795
eqcorr2d/scripts/verify_results_eqcorr2d.py,sha256=IiRxIAgjAVdQdiRhrngNlgka9GMDPPYrPou3ZMRlBMM,9878
orthoseq_generator/.gitignore,sha256=qYdVPDkcyfmjpgaXHRhovvFtTXJnHRTWvdW-gjsseaY,65
orthoseq_generator/README.md,sha256=WbdOK5erpT1IR-tzt1kHf2fQs1ZyIHiVD99zjziWw4Y,19578
orthoseq_generator/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
orthoseq_generator/energy_computations.py,sha256=6g_FDPnZSA26rxoaMEnQAUK5AE1GECLCO2F_EqNfHoc,28491
orthoseq_generator/energy_plots.py,sha256=lNRdkJh48HbwezT5sBsFEeCIxZklSOod1cMUddX9Gno,6641
orthoseq_generator/helper_functions.py,sha256=3Boo11_QDkSvSF0kNVcLwHyDKb7cLCZbp-J_aNZVNUk,6599
orthoseq_generator/naive_search_algorithm.py,sha256=QCbjY8GBmlQ7Uxm5Vd3R3HAeR8YR9DKiuI4ybYPzUuA,12124
orthoseq_generator/numeric_functions.py,sha256=gGM766mpkZz6pc6onhyAHAuW4VpRhvjFzFRsg3gqP20,4100
orthoseq_generator/search_algorithm.py,sha256=oeyDEl5BSHitlB25YwVmyv7zGaV-GSl8RAaU2WzYYpc,32402
orthoseq_generator/search_report_reader.py,sha256=_4GcWpDuejSWeRsfGa_026lTNE_oS2fRpaUPp7l9Cjs,6087
orthoseq_generator/search_reporting.py,sha256=j6R5Pcs6uYxIbclv5pbi1F-0qFL47EAF55fOp8tA-Ik,20756
orthoseq_generator/sequence_computations.py,sha256=5guiHUftUEnGLEWCwb7Xp8lgq_tvo-DoJeEFlk8raI4,477
orthoseq_generator/sequence_generation.py,sha256=MgBQ0ZGBGTfNLfdG6lHxKM-vyya-RdwgrHDII2Tb6hY,10995
orthoseq_generator/vertex_cover_algorithms.py,sha256=wXtQ_w8siD7FLv0d4qh_lFVdbaBcovfU7ybciUrtawk,15673
orthoseq_generator/scripts/load_sequences_from_txt_and_plot.py,sha256=xt8Xk8Mx17zAUu74KM8ol6W4VybVkyQekerllzeAkBs,1497
orthoseq_generator/scripts/load_sequences_from_xlsx_and_plot.py,sha256=o-Sy2R-ScjXeaLINj21HqWv8ED2OLNQwguoZgKuCZWI,1853
orthoseq_generator/scripts/pre_analize_sequences.py,sha256=S-e789sb3AZjRmo6oPLvhd4kTRGq_n1m8DqgEeLelRc,2819
orthoseq_generator/scripts/pre_analize_sequences_in_range.py,sha256=k7QZUMAFNft5nmVayMzOB3tWCrCJ_f61b7rsz9VXgmo,2650
orthoseq_generator/scripts/run_naive_search.py,sha256=uFmeAX4ff7kPAs8Uw-1n2EPA-AIfIrSFVb3wY-BOZUs,5270
orthoseq_generator/scripts/run_sequence_search.py,sha256=brxaRrWLmEYGCI1VVR1B-OLQKMj6NZxVzxHS3zzq8JE,5606
orthoseq_generator/scripts/auxilary_scripts/compute_energies_from_seq.py,sha256=tKNqO5L_xKUz0jGMsR1LIgii54RCoZwK8asloO1FEQY,3034
orthoseq_generator/scripts/auxilary_scripts/compute_numeric_independent_set.py,sha256=e687D56c0pdPi1tE0RH1H9yjwEQV43x-G_LcTdxPeVM,174
orthoseq_generator/scripts/auxilary_scripts/compute_ontarget_energies_from_excel.py,sha256=H-mqAt8xQDIr5RwW7qTw8T2sKePPhGplwbqL3we_MLM,1934
orthoseq_generator/scripts/auxilary_scripts/create_zenodo.py,sha256=Yr3Zg9s3tkcrFDFW9OpjCUnzyVkmpal4VQ3vNDWB5Mo,5547
orthoseq_generator/scripts/auxilary_scripts/energies_to_pkl.py,sha256=VAMowdsJjkD_YE_Upv8JQ80ajl4qQ0fft7EsEKNWjno,1753
orthoseq_generator/scripts/auxilary_scripts/plot_numeric_independent_set.py,sha256=MqGzczPyB6-ZiqqVf6QtCr4OT0BmN5gauO65mXPkzQE,957
orthoseq_generator/scripts/auxilary_scripts/plot_numeric_independent_set_heatmap.py,sha256=lwaNcd2cO4a3h0IAKko5yGFZ1hLwS076be_CiPQ1_4E,1937
orthoseq_generator/scripts/auxilary_scripts/print_single_sequence_mfe.py,sha256=sUb1H4p5KmT3adUeSqngP8bZT59jF_nRBSRzSe4P-VM,1031
orthoseq_generator/scripts/auxilary_scripts/recreate_old_format_from_csv.py,sha256=_B9Mlab3bvKIryRJ5MIEc8utUJP80a43doDg3xeVoiI,966
orthoseq_generator/scripts/auxilary_scripts/recreate_old_format_from_single_list.py,sha256=Ntak8edHEdP9rWOU0PhTzxzKnF-N7-iGctLTA5Bx_e4,1040
orthoseq_generator/scripts/auxilary_scripts/test_seqwalk.py,sha256=qQLMPrfv7nB3eL4uVPb6FRFSWzencw089-u2PdO8TVA,575
orthoseq_generator/scripts/auxilary_scripts/Nupack_only/nupack_only_search_no_conc.py,sha256=5htfoJVNIsYKyhpZoiLoQicWnMIfz1TVHTQPDWOD8a4,8497
orthoseq_generator/scripts/auxilary_scripts/Nupack_only/nupack_validation_1.py,sha256=YqLwY2gaYEpO7AbJ0pg4g77-5YKbPl9TAZybrH_sLEs,3052
orthoseq_generator/scripts/auxilary_scripts/Nupack_only/nupack_validation_2.py,sha256=GCdgT3WgU_roixFKj5To4_FqrOwhOOKQQj4dXXJKIfw,2465
orthoseq_generator/scripts/auxilary_scripts/figures/Figure_5/README.md,sha256=vnXYRMHTsL_mrrmqdSyF5DhgeFsHpsunH7C4xpm60LI,3470
orthoseq_generator/scripts/auxilary_scripts/figures/Figure_5/plot_figure_5.py,sha256=lrQ7NeceHQZSTClBaR8M-qO_P8JD1u01pALtdmZWCDE,19242
orthoseq_generator/scripts/auxilary_scripts/figures/Figure_5/prepare_data_f5_hybrid_seqwalk.py,sha256=7yljzVSFV3gzByeQiAju3KpsRl--bKfwQgdvuEwNjaQ,6104
orthoseq_generator/scripts/auxilary_scripts/figures/Figure_5/prepare_data_f5_seqwalk_max_orthogonality.py,sha256=b00Fz7E6whJNJwDQJcSCpoXKdcq4IpaZiurdl19nSZI,8485
orthoseq_generator/scripts/auxilary_scripts/figures/Figure_5/data/.gitignore,sha256=Jo_NIQet5MFJGbQzHGhc2wP7Vxcyc5yBkbZwowpZBTk,28
orthoseq_generator/scripts/auxilary_scripts/figures/figure_1/plot_figure_1.py,sha256=9f4WCQMsW_lMuqZpQv5Ml57aeuVeZY9CTgwqyNd86Zs,8115
orthoseq_generator/scripts/auxilary_scripts/figures/figure_1/plot_selection_helper_functions.py,sha256=JlG-qDEzr3XVtT6-14nOUWejaBRtA60EDZ5tGw1xXoc,5568
orthoseq_generator/scripts/auxilary_scripts/figures/figure_1/prepare_data_f1.py,sha256=xbwaOiGn3SNzrnzjLaCIDj1rXSusEaBLdenk_6CNo1M,4946
orthoseq_generator/scripts/auxilary_scripts/figures/figure_1/data/.gitignore,sha256=gXiCi6BSIjvMOwSE8GGYjeKWfDZCSTbw5GmPnyJhgYw,21
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/analyze_conflict_probabilities.py,sha256=glYSUxN1yKNdfo5mvvfYg6YVRK_YGtOOMqSmBr0BCMQ,2835
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/compare_algorithms_from_pkl.py,sha256=i2yJWIiFVh7cx7ygx7msG24-uKO9tpf2PYusvli1TxU,14603
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/compute_short_seq_energies.py,sha256=x_EwDy7SNvlXtYu-fWjRwD0GoJugVU4JJVrxwR75FDw,3319
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/pipeline_config.example.toml,sha256=KVNHbC7zbSKYp6XLwECC7q5aIIEDIA8nlHH2KtewlNg,674
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/plot_all_results_individual.py,sha256=uJBYMtY_al_ZiREuC3pP7VwVVFabwkjz0pua94BJON8,8906
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/plot_all_sigma_per_seq.py,sha256=_5rjlHaK-q-_7Wq5k1FzsAdyNwRJDiP2FTogZSXG2PE,8217
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/plot_histograms_for_single_sigma_from_csv.py,sha256=1sY_D8cupgxP5q-D2w7m5gnSN1C3uhsjH3RpfLnhLsY,4060
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/plots_single_sigma.py,sha256=fAdQabktFiJvh6WKOo9VTbw8BHK2z3HnsMKiVLLLS8M,10642
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/run_pipeline.py,sha256=LXfcRk2fhYaVA5pFJYUwfCI5JlzerJBfrVgl9wKAxIE,3515
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/server_test_full.sh,sha256=Xbs7NL6bt8Sn5dOwjaWIuwVSsz4tkaFobK7B-5fxu2I,353
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/test_.toml,sha256=rq0C5gqkN-mlvAkvauEE3_jpyinxoUnZTODRN6eL3E4,649
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/6mer_sigma0p25.toml,sha256=c-PsVBEO8atHBPhhBVFUVfL_Eb52Yh1CnNYRIWVVfgk,650
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/6mer_sigma0p5.toml,sha256=toE-pVRn426cYMR9VmCbdaNbURArd6WktD0iw7CCtvI,649
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/6mer_sigma1.toml,sha256=vw9UIclhdcauuFlJG8s6R_LQ3th2hDZVYYLu9DqKB8U,647
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/6mer_sigma1p5.toml,sha256=SGZgBVPp6mtJn4c48CLPFHBYAEOiS2dhl-UfzhbvQX0,649
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/server_6mer_master.sh,sha256=3ZMszELR-1ar9zj_FYlYqdYZACr2WUz87BXAAtNSam4,163
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/server_6mer_sigma0p25.sh,sha256=4LTLuuw5KmL55fsfyD4jOSf8sovG3kTKgnHMFJMW74o,348
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/server_6mer_sigma0p5.sh,sha256=_2nwHOl-Cgb1mx39AALxcWSL9LFxvgngJOB48VtzJz4,347
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/server_6mer_sigma1.sh,sha256=pdvfbDBOVAWi5U8QnvvSpZTDG-tn2xhKcWDr0-GHA5M,345
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/server_6mer_sigma1p5.sh,sha256=WApRsmNyscfc4qAe6cLjACVU1cxhX6Iw14qzLhrL9mA,347
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/server_6mer_test_priority.sh,sha256=yXmDOP06JlVgNpUmqH0RBCsVJYC8OieuswP_zzd0jNk,350
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/resume/6mer_sigma1_resume.toml,sha256=95zv08xy29zuxmFXYP-oG2ocsi476Qs3hdyxp7-Mw7A,446
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/resume/6mer_sigma1p5_resume.toml,sha256=WpQiaKKPV-o_t81aSh1TYhcXPAMh9OgGHAqKVa4ocJ4,448
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/resume/server_6mer_sigma1_resume.sh,sha256=xo2oaDHhf6kdHYSu-R10mlD4m9cJYNrS-RgIlTJGg-w,412
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/6mer/resume/server_6mer_sigma1p5_resume.sh,sha256=dUefUHTRK6S-XKnTIKjo1Gb74JP-DtX9WZudWKqX6f0,416
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/7mer_sigma0p25.toml,sha256=tPr2AgEUaA_Iq651CcmuFXjP1b1qnx0vyppFgGrSxV4,650
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/7mer_sigma0p5.toml,sha256=HK1ZdWz1LF86hVOsGvIHp7Y_W1TXhWABZQdxDDp3Qps,649
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/7mer_sigma1.toml,sha256=iQKEOBanWN-tuutAXQaOFW220dQ-TTLSzWEusd0LlRo,647
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/7mer_sigma1p5.toml,sha256=h7WLyFRfBS-BJaxq6Xiw7yqLUmgF1N9Wp9cKKFjBl9s,649
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/server_7mer_master.sh,sha256=XQSDNGPYo_B53wcTKoEO-ZRcTuIyvoi9CfcHFoMGtOA,163
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/server_7mer_sigma0p25.sh,sha256=nvfr9ijYnv7jeqNAgM-Vao5yxyBSPCFi1CVtaNZPaBs,350
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/server_7mer_sigma0p5.sh,sha256=vfk-vUx6GNnswqgprx7DiFigfDwIMlUZJ5Vigqfm6J4,349
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/server_7mer_sigma1.sh,sha256=DeOE2siMbU42-Enw32UwT2EhReWJcYEUZSdrYzA_ALA,347
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/server_7mer_sigma1p5.sh,sha256=epfPhNtC_2BfSQq0zMGtGXyRGJ3qL3zkNoyjrkiq9tU,349
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/server_7mer_test_priority.sh,sha256=Qp-Ed7o87s_JjvbPP6yrN_eN_Ob4d3Ft7y7wxJYZwRM,350
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/resume/7mer_sigma1_resume.toml,sha256=Kz3fR8M2k9JI1ksVxQbJAjVrLTF__lGsrNetbJVn7NM,446
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/resume/7mer_sigma1p5_resume.toml,sha256=zrkzmR14YA8pXnN1r-4ZqQwQS6WsEj279XmAJxTdhnI,448
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/resume/server_7mer_sigma1_resume.sh,sha256=k6YbFonyNf6gGadT8_D7yA5HCgQJoHr4D2u6e9ZB56c,353
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/7mer/resume/server_7mer_sigma1p5_resume.sh,sha256=6o4PBPaxqv1IBKg9VMyx9nJXYPCS8PKkISLPghDPUUI,355
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/8mer/8mer_sigma0p25.toml,sha256=lExzSgIR1f-45z3l8CwioGiwJqD4B5_GcAZ4_iMRO3k,650
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/8mer/8mer_sigma0p5.toml,sha256=sGDjKGFXQ3HtQb2QFDZgwTOMhlHBpAlNTs3EOCwvRrQ,649
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/8mer/server_8mer_master.sh,sha256=6k5QlKRgjbhUMyml0M-9xpQMZ-CMxyd0vHj9zFmth5E,101
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/8mer/server_8mer_sigma0p25.sh,sha256=OMRzov0o5LXaJxd6w0e9_UHGDLqqMvikfp6zDzCIDP4,352
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/8mer/server_8mer_sigma0p5.sh,sha256=NY9GuHT822mOJjsjQB7ong6lnTwnre3CL2qD25NUm7s,351
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/8mer/server_8mer_test_priority.sh,sha256=bK6X0bSizxeloHaxp5W4t421HYTQYS7QpRx8hat4SVk,351
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/TTTT_6mer_sigma0p25.toml,sha256=4hN1frJzsebAMlsKWqPRDmNZf99TrltcrwxscJ3F2Nc,659
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/TTTT_6mer_sigma0p5.toml,sha256=MmTgzTvpvC30D5bxRR2MK7EhcpTXyMPa8PVNrv0uMJI,658
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/TTTT_6mer_sigma1.toml,sha256=aM0Q-q-QWePaxBWr9IQ3UsI5gY7C-82Dno-0GjpgNvc,656
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/TTTT_6mer_sigma1p5.toml,sha256=HYSIE_mreHbof5d4wOFYw3KUgl1ltrdxea13V6QRHGc,658
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/server_TTTT_6mer_master.sh,sha256=NJw-ZvFIqMruPhBWS9oiGah4CZE0w6Z-kTeSIuRqUok,183
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/server_TTTT_6mer_sigma0p25.sh,sha256=mkPO2DDbz9D6OA1DykCefZ3gEEGjmLU8wjNY83il5G8,494
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/server_TTTT_6mer_sigma0p5.sh,sha256=p8tQ8Gi85wHriuN6ksMn9NuixEERRDAPcU9Sfk7-jeI,490
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/server_TTTT_6mer_sigma1.sh,sha256=ni4MHQS4IW3nsn7KSUheCX11hE9cxa63ZLjSrWwfyBY,482
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_6mers/server_TTTT_6mer_sigma1p5.sh,sha256=Fz9L9j0nKkMg4Icb5pGk06r9a1fPbQEVXcYpjiI2IfE,490
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/TTTT_7mer_sigma0p25.toml,sha256=B8OcMPahyzTnFJX0N-2Gou91b2r7t5bDKLAEQ0HQIPE,659
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/TTTT_7mer_sigma0p5.toml,sha256=CoPs_yZU2AwHjlM5XOhpUIoUWgkp4RHQHNvB8oriD8I,658
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/TTTT_7mer_sigma1.toml,sha256=O-yvPXw-seFXo88NRy4dj3HSYVquFKlfX4FgeEqJSbQ,656
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/TTTT_7mer_sigma1p5.toml,sha256=t0_E7OM-NO4MKmrw-I0BfgCCsOtrE1lkd1jzk4WEqdo,658
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/server_TTTT_7mer_master.sh,sha256=hlRFpuie2J2dBbriRFW0_h4n9WHrTcI7p_1HR9YHw8Q,183
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/server_TTTT_7mer_sigma0p25.sh,sha256=BrLxeEfKA76sVEQ2Gw6BL7zYECMZiCGMjmL4Ooe9VBg,494
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/server_TTTT_7mer_sigma0p5.sh,sha256=FNJG-ETQrb-8raqJbyRMtIzVjPuydl7CGCg3UGicv9A,490
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/server_TTTT_7mer_sigma1.sh,sha256=S240l2D448Tt1x4FVZdwR6LTOspHEN99I2Liv3j2F7c,482
orthoseq_generator/scripts/auxilary_scripts/figures/old_poster/figure_2/server_run_stuff/TTTT_7mers/server_TTTT_7mer_sigma1p5.sh,sha256=pshKcxqP65XtR3Po2obNHVtCXogjD6Dzx3msyZcuglE,490
orthoseq_generator/scripts/benchmarking/.gitignore,sha256=mA9ywOd9rzLuLaPYu1PzwLm8ImQ2wHwIBZqO6NrpYnU,60
orthoseq_generator/scripts/benchmarking/README.md,sha256=IOcCRdiik0ONaXa0pozQZpe1Fzhm4-OcZKIbQ5VZ_TA,995
orthoseq_generator/scripts/benchmarking/ZENODO_BENCHMARK_README_DRAFT.md,sha256=hf45z4B4Ugmo8Qs4QYjAqpwGIgfQJicX1Fz_vmjLCV0,17139
orthoseq_generator/scripts/benchmarking/long_seq/.gitignore,sha256=J0b5hnswl9KLWS31yd05dHb7e6mLffbm7gTaCuqZH0o,63
orthoseq_generator/scripts/benchmarking/long_seq/README.md,sha256=RWbw1nihZMd5H1El-O_Dm_VNhS95i0-xVN82fNAsy84,5788
orthoseq_generator/scripts/benchmarking/long_seq/example_condition.toml,sha256=sKh_61tlI9nKrNbgV4yY0iXWdPFL1sXlNRjDMGWKoww,660
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.25.toml,sha256=f74AkbS6wxs8R3E5Fq3eW-rBsgLMro-k-1P_Sbwp7X4,951
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.l20TTTT.toml,sha256=qihyUeeD0ngNlnl8NNGh8yS7bFIFoSqHT_tpiXIjGaU,951
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.t.toml,sha256=Ufbq2vKivQdvrFKmJEs-D1BxUTbegwgtHG22en0jyss,972
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.x25TTTT.toml,sha256=0xGsNapOk4VKxkT88QED7lb1jyJQ1cBckAhTs2ZZEdA,987
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.x25____.toml,sha256=jbYCWS5UhAOoj-MwActVTHO3OHYo9Ls1Jwadx5E3fEE,983
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.xTTTT.toml,sha256=hhKRe7rE7limepT0NTooE1ZFPMcnMlpT151tHphRwQc,991
orthoseq_generator/scripts/benchmarking/long_seq/configs/templates/prep_config.x____.toml,sha256=gN6t1U1rNAe-jzxjDTRh0v0IlvF5dGKjPDvF1ZdHlC8,987
orthoseq_generator/scripts/benchmarking/long_seq/data/.gitkeep,sha256=frcCV1k9oG9oKj3dpUqdJg1PxRT2RSN_XKdLCPjaYaY,2
orthoseq_generator/scripts/benchmarking/long_seq/long_sequences/.gitignore,sha256=tClu9DvBPXXDXeQrF0NQ8SvrbjpMT5sc8SwpfIV0i9E,8
orthoseq_generator/scripts/benchmarking/long_seq/scripts/extract_best_sequences.py,sha256=_0TZ1StYkKPxafwYJWTMxgzJAu_aZWCA5k7iu24gvfk,3699
orthoseq_generator/scripts/benchmarking/long_seq/scripts/plot_single_limit_batch.py,sha256=OGCtAdJsLAdPfSGJ7wxnwG70SzFeZeURHtxJCSEcfvU,20570
orthoseq_generator/scripts/benchmarking/long_seq/scripts/prepare_conditions.py,sha256=6B2aGCE2Ov7vHOxMUpeyi2si9_z4auKruUT766BoExE,34747
orthoseq_generator/scripts/benchmarking/long_seq/scripts/run_long_seq_hybrid_search.py,sha256=wxNlAzURzWKb4Wha01blisaJcoA5FyZsn_Q7xobN_2Q,6917
orthoseq_generator/scripts/benchmarking/long_seq/scripts/run_long_seq_naive_search.py,sha256=WCiiDVhAAyZKqqMSm5Dhq2FcklM-xaNqW5a7LVFO5xA,6739
orthoseq_generator/scripts/benchmarking/long_seq/scripts/auxiliary_analysis/plot_init900_outside_crossref.py,sha256=6q2oooMI1NgBjWsyMIlALHmBbWsdIA2hRSSnBdzpt70,19898
orthoseq_generator/scripts/benchmarking/long_seq/scripts/auxiliary_analysis/plot_prune_fraction_sweep_end_levels.py,sha256=SQrdC2Ok-_EFdDUxmGM-SRdVeYAOxc5h-uv6kqaSzQQ,6299
orthoseq_generator/scripts/benchmarking/long_seq/scripts/auxiliary_analysis/prepare_init900_outside_crossref.py,sha256=YvKVP4FVkKvHgtPUGMmCXgzEaBihyWoozLtjRVh8sD8,21894
orthoseq_generator/scripts/benchmarking/long_seq/scripts/auxiliary_analysis/sweep_seed_vertex_cover_prune_fraction.py,sha256=ATXeCv62QFMx_GmuU7U4bHWVtEge1NKOugLCYLD54mg,7388
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/explore_initial_matrix.py,sha256=3uwwz-JZpIVzkgW7XB_v4wVO_cCzYNwLVCo_gWnX69M,32526
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/fit_naive_proxy_rate.py,sha256=UQ6bQtszc4kWBHZW4cJGSPztULYNpnQP85A45BNTHi8,14650
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/plot_init900_progress_only.py,sha256=ny7YF8Rmgeodmpatb4Ol0Zzm_Tt8Uvu6cDZa00sM24s,13420
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/plot_init_pair_benchmark.py,sha256=OqE3NOYqmIoJGJSeOQIoRH9U8LNC-ieN-EINkVTEqvc,22197
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/plot_init_pair_progress_scatter.py,sha256=2yd5CR1QdRsVUTiPvXqjrS8nE7vzsfOKRr1kdUnBqHA,22445
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/plot_init_pair_rate_benchmark.py,sha256=hIAG-TGzPJkVnPaUevxbm73u4qdlkXCATMD_ryq9QgU,54012
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/plot_live_benchmark.py,sha256=Rj6CQT-GxtmN1pP9e2p-XcwFBCyQFhhipQUcK_h3xU4,15352
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/plot_live_trajectories.py,sha256=kK9zetCkA2RkCZuyWWMlRfFkj0-8m19IndKGnwoYMQg,10925
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/predict_hybrid_budget_simple.py,sha256=6HZS-bGr3Rc-07yutG2UUm9WGKGoZ20N8QvglO_XVDg,16875
orthoseq_generator/scripts/benchmarking/long_seq/scripts/non_canonical/outputs/.gitignore,sha256=S7OL5tbZ7w0vm8wzmFD_SNgh7M-nOTaUArNUybqUbqI,16
orthoseq_generator/scripts/benchmarking/short_seq/.gitignore,sha256=O8Gp7VBqBU3_Oyyet3ysfafDdKZQ5D5vCi2iClF27_A,34
orthoseq_generator/scripts/benchmarking/short_seq/README.md,sha256=TKGwMVO0upr_IAIDCLADUX-IcZFvIQioc68DtLqpqwQ,5308
orthoseq_generator/scripts/benchmarking/short_seq/benchmark_algorithms.py,sha256=X3wbMJBw-wPiwa9F6hxNI5Ieea3GPV0Y4a_eO-7LIyE,33847
orthoseq_generator/scripts/benchmarking/short_seq/benchmark_analysis.py,sha256=JPUGJWmHwLnbbGdnXx5YeivD2p4sNnTT16z8wFYBTrw,7958
orthoseq_generator/scripts/benchmarking/short_seq/benchmark_dataset_tools.py,sha256=L_9LI4M_XukAnFF6KSBXEoKIQkj8qzzgWe9V2UEAF_k,20264
orthoseq_generator/scripts/benchmarking/short_seq/scripts/build_dataset.py,sha256=fLb-cg2p_NIjSoWB3jeUthFLO_bz72wotnFC-h_0Ko0,3132
orthoseq_generator/scripts/benchmarking/short_seq/scripts/extract_best_sequences.py,sha256=Qfax5Wa9KVWMUxSzTyW7I5JhF5QfUqEn_wattWbbGNw,4461
orthoseq_generator/scripts/benchmarking/short_seq/scripts/plot_batch_benchmark.py,sha256=f8kW4KESitjHHsdUkRApsoEMGYWz5R8UFLTFJ1O3Dh8,19016
orthoseq_generator/scripts/benchmarking/short_seq/scripts/run_batch_benchmark.py,sha256=BuJK_rqaD76Z6ZlypGkrhgqrhWaoEk_SjZpGBPqHhvg,13449
orthoseq_generator/scripts/benchmarking/short_seq/scripts/run_single_dataset_benchmark.py,sha256=xqaBuBIVL6zgmu0Gh7OQxlAde-lwjTpQKHvBYeA8y-U,9742
orthoseq_generator/scripts/benchmarking/short_seq/scripts/validate/compare_hybrid_offline_online.py,sha256=OUfTBbRWX9zljGoPiPzO4XgN-ZBNVz2CyWkIBiR8Tks,6377
orthoseq_generator/scripts/benchmarking/short_seq/scripts/validate/compute_conflict_probability.py,sha256=MxemTq-NTTYZssbYvpxnVP_w0qpgXCfM6gCc_NCR4Ks,1044
orthoseq_generator/scripts/benchmarking/short_seq/scripts/validate/find_offtarget_limits.py,sha256=3K_Po4hc3xqt_oH9WaPYtOg0CryUUb7PADAX2ijoWzk,1083
orthoseq_generator/scripts/benchmarking/short_seq/scripts/validate/run_hybrid_search_offline.py,sha256=d7aEMmCDD6P8R4AEIuctLLE-IiRYeKyDrUUDCM2kl5o,703
orthoseq_generator/scripts/benchmarking/short_seq/scripts/validate/run_naive_search.py,sha256=pm3yy8w6BJZUV6NrDwT7AB5ivUtXIEmdMlWBlXXxNXw,578
orthoseq_generator/scripts/benchmarking/short_seq/scripts/validate/run_vertex_cover_search.py,sha256=hL7ptOTNhxRS89ZuCMrYdFpuGONJMLlpPB8lr6BVxJA,690
orthoseq_generator/scripts/benchmarking/short_seq/short_sequences/.gitignore,sha256=tClu9DvBPXXDXeQrF0NQ8SvrbjpMT5sc8SwpfIV0i9E,8
orthoseq_generator/scripts/legacy/legacy_sequence_search.py,sha256=NVfgf2K-WW5cJhXTenDPs04CpvWo6HwZXQX8rwJO3pQ,2742
orthoseq_generator/scripts/legacy/precompute_energies.py,sha256=tE_3UYQwLG20n02Dl8Pe7wUSeY-e-9oKBfsqIkQIKTs,2545
orthoseq_generator/streamlit_app/__init__.py,sha256=RgIDCUo-7oFt7g885sbiNCGdEy6g3fOBG5NerYBtfGk,57
orthoseq_generator/streamlit_app/cli.py,sha256=43PzL9M2-cOeeCPAwad4v5eaEdEl0Um8KqZkVPXoQZM,334
orthoseq_generator/streamlit_app/logging_utils.py,sha256=i40sl8w-u8rZWxdSnbXX7F2oweXwIca_T3ViWK8Em3Q,1370
orthoseq_generator/streamlit_app/orthoseq_app.py,sha256=xqOG3eR8MzB_OEcdvSX9n3pgafujLQCjEtl_wtzBU-I,13528
orthoseq_generator/streamlit_app/plotly_utils.py,sha256=A8G_wVLVNL9IAYkoRBdqkZNRLnhF92deV3NRfAPJ5m8,6108
orthoseq_generator/streamlit_app/state_manager.py,sha256=Z_g6_sT-jekcyA7dF8GZpXNHPqMieHMMCu13wflWmqk,7871
orthoseq_generator/streamlit_app/graphics/on_target.png,sha256=db6nvCFi1Mvd24Dnh1SZJySJCixQF6c1mpJg2jhpdu4,82402
orthoseq_generator/streamlit_app/tabs/__init__.py,sha256=OTz8x-z5MSwHtxxO_UaNwe7ELA4_5LNfpAiTCcGUnrE,265
orthoseq_generator/streamlit_app/tabs/tab_exploratory.py,sha256=arpaCqP-HBRDKbNm9G4kqWqiux7tiM8WxNHtS5WjkKM,5892
orthoseq_generator/streamlit_app/tabs/tab_load_results.py,sha256=gNNG-cjQ05iy2SxpSn28ihoKd01AJIcVKE-wT-RWGcM,8589
orthoseq_generator/streamlit_app/tabs/tab_refinement.py,sha256=j7xnZxfVSZ_QEhhyEpIEpHrlluh6F0G2vRcwrrKhtPM,7015
orthoseq_generator/streamlit_app/tabs/tab_search.py,sha256=0uxvCAE6tPXHhzqx9hxgLy9wDlu9mxkiqWTVv6Hb_qw,16455
orthoseq_generator/streamlit_app/tabs/tab_selection_helper.py,sha256=8AXSUom7q1NKm9aD-JPcybNfcfCwAqmKTHDcMNvMk0E,6231
orthoseq_generator/tests/.gitignore,sha256=hA539dWkuHMm6Qs7qdru0dzSziXEevn50bsNY4S0v1c,73
orthoseq_generator/tests/orthoseq_energy_type_hybrid_check.py,sha256=t2HJUXaHCCInDZA4qRMdrag9W48zdXb2q_WcsfttQzc,6244
crisscross_kit-2.0.0.dist-info/METADATA,sha256=uq84ZYTin7M8N8yR1IK2bYK-jQpHy9B0u7FqXP5dPmQ,2797
crisscross_kit-2.0.0.dist-info/WHEEL,sha256=AP_wkikJcUkDPUGvTNydv7g0R7BhW1u_fVHNKW7TJyI,101
crisscross_kit-2.0.0.dist-info/entry_points.txt,sha256=6bNrlNiqn71HdvDQohCnWJt94T-BBBCI-CE4Hsmu6ds,335
crisscross_kit-2.0.0.dist-info/top_level.txt,sha256=Ew72BWpaAacMcMkDAb07Bl5xkcLNKfGixUjNO-YhNjw,39
crisscross_kit-2.0.0.dist-info/RECORD,,
