Installation

1. Install copepodTCR.

   With pip:

   pip install copepodTCR
   

   Or with conda:

   conda install -c vasilisa.kovaleva copepodTCR
   

2. Install dependencies for 3D mask modeling. You can skip this step if you do not plan to use functions from the 3D models section.

   After installing copepodTCR either way, install manifold3d:

   pip install manifold3d
   

   Blender is an alternative to manifold3d. It can be installed from the Blender official website (version 4.5 or higher).

   Use cpp.pick_engine() to check which boolean-operation engines are available in your environment.

Requirements

Except for manifold3d, the required packages should be installed automatically with copepodTCR. If they are missing, install them manually.

• pandas>=1.5.3

  pip install "pandas>=1.5.3"
  

• numpy>=1.23.5

  pip install "numpy>=1.23.5"
  

• codepub>=2.3

  pip install "codepub>=2.3"
  

• trimesh>=4.7.1

  pip install "trimesh>=4.7.1"
  

• PyMC>=5.9.2

  pip install "pymc>=5.9.2"
  

• Arviz>=0.16.1

  pip install "arviz>=0.16.1"
  

• matplotlib>=3.10.5

  pip install "matplotlib>=3.10.5"
  

• seaborn>=0.13.2

  pip install "seaborn>=0.13.2"
  

• plotly>=6.2.0

  pip install "plotly>=6.2.0"