LICENSE
MANIFEST.in
README.md
pyproject.toml
calibration/spatial-empirical-gold-standard/README.md
calibration/spatial-empirical-gold-standard/program.json
calibration/spatial-empirical-gold-standard/schemas/observations.schema.json
calibration/spatial-empirical-gold-standard/schemas/program.schema.json
calibration/spatial-empirical-gold-standard/schemas/study-manifest.schema.json
spec/BNS-001-capability-contract.md
spec/BNS-002-input-invariants.md
spec/BNS-003-execution-fidelity.md
spec/BNS-004-evidence-maturity.md
spec/BNS-005-abstention-and-degradation.md
spec/BNS-006-provenance.md
spec/BNS-007-cross-method-validation.md
spec/BNS-008-host-conformance.md
spec/BNS-009-capability-lifecycle.md
spec/BNS-010-capability-certification.md
spec/BNS-011-failure-taxonomy.md
spec/BNS-012-claim-evidence-ledger.md
spec/BNS-013-scientific-assertion-firewall.md
spec/BNS-014-biofailurebench.md
spec/BNS-015-flagship-certification.md
spec/BNS-016-standards-interop.md
spec/BNS-017-claim-semantics-ir.md
spec/BNS-018-rule-calibration-and-challenge-network.md
spec/BNS-019-scientific-semantic-conventions.md
spec/BNS-020-conformance-test-kit.md
spec/BNS-021-evidence-debt.md
spec/BNS-022-scientific-semantics-neutral-governance.md
spec/BNS-023-independent-validation-network.md
spec/BNS-023-validation-transparency-network.md
spec/README.md
spec/registry.yaml
src/bionexus/__init__.py
src/bionexus/abi.py
src/bionexus/agent_routing.py
src/bionexus/airgap_guard.py
src/bionexus/analysis_audit.py
src/bionexus/annotation_evidence.py
src/bionexus/artifacts.py
src/bionexus/attestation_authority.py
src/bionexus/backend_conformance.py
src/bionexus/backends.py
src/bionexus/bigdata.py
src/bionexus/calibration_freeze.py
src/bionexus/capabilities.py
src/bionexus/causal_dag.py
src/bionexus/certification.py
src/bionexus/claim_checker.py
src/bionexus/claim_semantics.py
src/bionexus/cli.py
src/bionexus/closed_loop.py
src/bionexus/cluster.py
src/bionexus/compliance_ledger.py
src/bionexus/contract_traceability.py
src/bionexus/contracts.py
src/bionexus/cryptographic_verifier.py
src/bionexus/debt.py
src/bionexus/doctor.py
src/bionexus/ecosystem_claim.py
src/bionexus/ecosystem_intake.py
src/bionexus/egress_guard.py
src/bionexus/empirical_warrant.py
src/bionexus/eval_receipt.py
src/bionexus/evaluation_contract.py
src/bionexus/evidence_model.py
src/bionexus/failclosed.py
src/bionexus/failures.py
src/bionexus/gate.py
src/bionexus/guard.py
src/bionexus/human_adjudication.py
src/bionexus/independent_pseudobulk.py
src/bionexus/instrument_gateway.py
src/bionexus/integrity.py
src/bionexus/intent_router.py
src/bionexus/interop.py
src/bionexus/inventory.py
src/bionexus/io.py
src/bionexus/ivn.py
src/bionexus/lab_policy.py
src/bionexus/ledger.py
src/bionexus/lims_hub.py
src/bionexus/local_cache.py
src/bionexus/nextflow_bridge.py
src/bionexus/pipeline_config.py
src/bionexus/preflight.py
src/bionexus/private_llm_provider.py
src/bionexus/provenance.py
src/bionexus/pseudobulk_warrant.py
src/bionexus/registry.py
src/bionexus/remediation.py
src/bionexus/research_purpose.py
src/bionexus/research_snapshot.py
src/bionexus/researcher_override.py
src/bionexus/rosalind_adapter.py
src/bionexus/rule_calibration.py
src/bionexus/rule_classification.py
src/bionexus/rule_provenance.py
src/bionexus/scfm.py
src/bionexus/scientific_semantics.py
src/bionexus/semantic_router.py
src/bionexus/skill_runtime.py
src/bionexus/spatial_alternative_battery.py
src/bionexus/spatial_empirical_gold.py
src/bionexus/spatial_gold_cli.py
src/bionexus/spatial_inference.py
src/bionexus/spec_registry.py
src/bionexus/standards.py
src/bionexus/statistical_rules.py
src/bionexus/tangram.py
src/bionexus/tool_receipt.py
src/bionexus/trust_cli.py
src/bionexus/trust_evidence.py
src/bionexus/validation_network.py
src/bionexus/validation_verifier.py
src/bionexus/verification.py
src/bionexus/versions.py
src/bionexus/warrant.py
src/bionexus/bctk/__init__.py
src/bionexus/bctk/cli.py
src/bionexus/bctk/engine.py
src/bionexus/bctk/profiles.py
src/bionexus/bctk/reporters.py
src/bionexus/bctk/spec.py
src/bionexus/bctk/targets.py
src/bionexus/bctk/dimensions/__init__.py
src/bionexus/bctk/dimensions/_unassessed.py
src/bionexus/bctk/dimensions/abstention.py
src/bionexus/bctk/dimensions/backend_identity.py
src/bionexus/bctk/dimensions/biological_semantics.py
src/bionexus/bctk/dimensions/claim_warrant.py
src/bionexus/bctk/dimensions/cross_host.py
src/bionexus/bctk/dimensions/failure_handling.py
src/bionexus/bctk/dimensions/input_honesty.py
src/bionexus/bctk/dimensions/provenance.py
src/bionexus/data/__init__.py
src/bionexus/data/empirical_calibration_registry.json
src/bionexus/data/evidence_attestation.schema.json
src/bionexus/data/rule_registry.json
src/bionexus/data/signed_revocation.schema.json
src/bionexus/data/trust_registry.json
src/bionexus_reliability.egg-info/PKG-INFO
src/bionexus_reliability.egg-info/SOURCES.txt
src/bionexus_reliability.egg-info/dependency_links.txt
src/bionexus_reliability.egg-info/entry_points.txt
src/bionexus_reliability.egg-info/requires.txt
src/bionexus_reliability.egg-info/top_level.txt