milume

milume

Notebook widgets for spatial omics that stay in sync with Python.

Draw landmarks and selections on tissue coordinates in AnnData. Persist hits as obs_names — analysis stays in the notebook.

pip install milume
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LandmarksWidget

Lasso, rectangle, ellipse; point, line, spline, shape. Color by category or gene. Neighbor expand runs in the browser. Read selections back with get_obs_names.

LandmarksWidget showing a tissue point scatter with selection tools

Landmarks guide · API reference · Source on GitHub