AUDIT.md
CHANGELOG.md
CONTRIBUTING.md
DECISIONS.md
IDEAS.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
docs/CONFIGURATION.md
docs/INSTALL.md
docs/RELEASING.md
docs/custom_features.md
docs/geometric_cvs.md
docs/examples/README.md
examples/hiv1_protease_cantilever/README.md
examples/hiv1_protease_cantilever/contrast.py
examples/hiv1_protease_cantilever/ds_ensemble.pdb
examples/hiv1_protease_cantilever/ds_g16c_l38c_ensemble.pdb
examples/hiv1_protease_cantilever/prepare_ensembles.md
examples/hiv1_protease_cantilever/regions.py
examples/hiv1_protease_cantilever/reproduce.py
examples/hiv1_protease_cantilever/test_contrast.py
examples/hiv1_protease_cantilever/test_flagship.py
examples/hiv1_protease_cantilever/wt_ensemble.pdb
src/confdelta/__init__.py
src/confdelta/__main__.py
src/confdelta/_align.py
src/confdelta/_version.py
src/confdelta/cli.py
src/confdelta/compare.py
src/confdelta/config.py
src/confdelta/core.py
src/confdelta/differential.py
src/confdelta/ensemble.py
src/confdelta/features.py
src/confdelta/geometry.py
src/confdelta/interface.py
src/confdelta/msm_backends.py
src/confdelta/py.typed
src/confdelta/stats.py
src/confdelta/utils.py
src/confdelta.egg-info/PKG-INFO
src/confdelta.egg-info/SOURCES.txt
src/confdelta.egg-info/dependency_links.txt
src/confdelta.egg-info/entry_points.txt
src/confdelta.egg-info/requires.txt
src/confdelta.egg-info/top_level.txt
src/confdelta/experimental/__init__.py
src/confdelta/experimental/resistance_classifier.py
tests/conftest.py
tests/test_cli.py
tests/test_compare.py
tests/test_config.py
tests/test_core.py
tests/test_differential.py
tests/test_ensemble.py
tests/test_feature_builders.py
tests/test_features.py
tests/test_geometry.py
tests/test_integration.py
tests/test_interface.py
tests/test_msm_backends.py
tests/test_package_api.py
tests/test_resistance_classifier.py
tests/test_stats.py
tests/test_utils.py