factorforge/__init__.py,sha256=_UnFMXHlD4C4kNca4tlxzdbfZ8xg8hLFYOAsoo9Nqro,387
factorforge/__main__.py,sha256=RySN-WoCw4Dve69QLaLBfju3E_P6gsPPZqfT3SjMVXA,120
factorforge/database.py,sha256=LM_F2C1BwfoiKZk0pZD6eLYthuHpS2SBlwdNA6KqyAk,4961
factorforge/validation_registry.py,sha256=Oyt30KvtYowdxneoE86gOC_4Cjuctgu20VnuvR3Rh1w,12526
factorforge/validation_report.py,sha256=Mr7UB1sZDch7-ZCAcER-ONBLR5DuQ4-1o8W-17kKF9s,3591
factorforge/analysis/__init__.py,sha256=BQGj0ZpwhqvHy2YJe27EQQoY2jtMSJOv7RxM0ALH6XI,886
factorforge/analysis/feasibility.py,sha256=vY-0tsQCm9DFNB8l455uytPcB47Jl2elnaxo1NdBIok,8660
factorforge/analysis/metrics.py,sha256=S4JjHPb-GMtXWSgdhPlu0vhv4hK-Y6IV3FOd5tYXmok,13761
factorforge/cli/__init__.py,sha256=5wySGdIHUcsQTnFYmzHVr2ulKqf0tLxT66aS7iGx3Qw,207
factorforge/cli/legacy_cli.py,sha256=Umr3myuG7RZ9mlzRjc29Lq3N5BR-zWvEqyWSgq-YtoQ,607
factorforge/cli/main.py,sha256=scCvj2Om-l-Sp_LwZoBdThNzLDQ8YVLO_OCD3UuvehU,22787
factorforge/core/interfaces/__init__.py,sha256=GjN62Vi6u7rAAggWQhrw1a6OGZX29ZEpmhWMpv8IEvo,242
factorforge/core/interfaces/exporter.py,sha256=2IEbIZQFE0zZMOZRO34v6vajdoawcR0lpdnXTXOWmLw,302
factorforge/core/interfaces/optimizer.py,sha256=E5GiMtIHErtZhHYJMz_qPvzsU2L3JZjB3gBFkiai9Cc,1818
factorforge/core/interfaces/validator.py,sha256=e2EBFqFmaMQOP82f14uUHbtCVxw2woXa3HRXXHnxZyM,163
factorforge/data/nbenthamiana_codons.json,sha256=3b0KQdqIEJpwm8oDBFgeKb0KdW5NscUYCdUALpstXow,12175
factorforge/data/nbenthamiana_golden_set.json,sha256=EWgkJVEpCyzy0sM_78mr2M_0bF1j56xPlOG4YLuskA8,7025
factorforge/data/ntabacum_codons.json,sha256=RdMAz9OUzoOHpNK8W1uIEhmi-r9kgca5BMVKSh3fPVU,12503
factorforge/data/wolffia_globosa_codons.json,sha256=ObCuRX30n4m-8VZzBK1BxSrjYc3DqboVPMSNy2N2r68,12366
factorforge/data/profiles/nbev11_cds_all_derived_codons.json,sha256=Dy5ImDoH7VAaDd-06_u0uGK0nZFyIXIQFPwtkFCdhrg,12503
factorforge/data/profiles/nbev11_cds_all_derived_filtered_stats.json,sha256=nzidyFd3X9lbp9Mobcyz3-s3qTSkEqsf2x1wxKrOr1w,1605
factorforge/data/profiles/nbev11_cds_all_derived_manifest.json,sha256=ZrnXIVRfyKtxEQxxqwJUzRJNtUmQQ6KAqYp1YKbC4gI,865
factorforge/data/profiles/nbev11_cds_hc_derived_codons.json,sha256=aG8S8ogbAKRSRmcObHPhDSJUhUV3xTI86xmp7ljuh90,12481
factorforge/data/profiles/nbev11_cds_hc_derived_filtered_stats.json,sha256=m6j_Q2lTOpIgIiNbsMeaFWJ2OTqmOi9Z-JUizP3b89Y,1602
factorforge/data/profiles/nbev11_cds_hc_derived_manifest.json,sha256=WwP-abAIv_So_sM1bM-QUCRDICjLClulnGiqJpKatLk,838
factorforge/data/profiles/qld183_v103_derived_codons.json,sha256=GRqQqp76jj3J0CxPXADALBY4gkiuzUY4iLzbHwVix-0,12519
factorforge/data/profiles/qld183_v103_derived_manifest.json,sha256=JmzWnROTxYUhBm_dUyOMdFmoh9FH2EPf7lmAYHcYlSo,896
factorforge/data/profiles/qld183_v103_filtered_stats.json,sha256=asRXzYSxwilwh3lNE33BEbvtwLHFo7U79FKSG8BoOSA,1596
factorforge/data/reference/reference_policy_manifest.json,sha256=EO1fkIIG3KijcbziWzXtRM9i8RJ5h34Gyu4hr7U6Zgk,15187
factorforge/data/templates/high_expression.json,sha256=QaxeGWHBrdwQZgiTtvRCeD-oNaNFKw5UTeWPjxOAQ_U,770
factorforge/data/templates/standard_expression.json,sha256=wVr4gXJ_DLBs5xIE1jXOTzHKaNDXrnqfSuppDySNK7o,736
factorforge/engines/__init__.py,sha256=tnzwmbsTxsKu5oyc85h6e59TqRTpBU-HRqqeTPr4SAw,549
factorforge/engines/registry.py,sha256=J7DSdccq6_2LFwDnOVxeqhqBgbseSl5g-OWxXGTmnL4,4337
factorforge/engines/profile/__init__.py,sha256=Uuq9HxWF4al2OoFYM78RteIR_YwuIzpUUKZWBBMZsPI,355
factorforge/engines/profile/codon_table_builder.py,sha256=u-bZTmyBKkFfqDcBqQhJhyAgeqHWDuZ8lpCCQfATHeQ,3951
factorforge/engines/profile/construct_builder.py,sha256=6bhp3RnivzdJS1rT-1DYd0IfreWID1_kqeoz6wpkT6s,14645
factorforge/engines/profile/exporter.py,sha256=Zzqm02tB-_PovX4YizDGAo9eAM9zZCg7KP2i5BFve-8,16959
factorforge/engines/profile/optimizer.py,sha256=Pm8EtV2I5f-oEh83iGEKGik4dwp19Cnt3KQ4bq5E-Lk,9884
factorforge/engines/profile/pipeline.py,sha256=Bi7PN8XKImowAzgzqR5RQK7H1hnRcPW64p9ZI94NjGY,14854
factorforge/engines/profile/scoring.py,sha256=ZQjU8hYxZQjNj393OSWr3bhQOvUNIMKmyPZJWOc_cfQ,18956
factorforge/engines/profile/scoring_ml.py,sha256=SqVrKGKAx8F-fLLHkOXxvjXSVkaM_4_UM1dlS2AO8Rs,8108
factorforge/engines/profile/utils.py,sha256=t2tMryDUqGs6MR4_mI9cvnETQHUZHcj4lT9R_lq3BWU,7464
factorforge/engines/profile/validator.py,sha256=OdWV7UCBMgCbI_NdxNnK_2NIs98jZqxEyCFOTRP6uzQ,12799
factorforge/engines/profile/rules/__init__.py,sha256=0zBgfTAYPwhfJ-BFE-tLp9i9s5u1W3FbkSDYxLngXjU,83
factorforge/engines/profile/rules/domesticator.py,sha256=dNtb436aJLozqlf0N4jl0b8BylfSW3FYmIUs7_WQvA8,13961
factorforge/engines/profile/rules/reverse_translator.py,sha256=H8y8JdFyEFMMl0cJV79pojIyCMEAAklgN6ZM7J9TgeY,33583
factorforge/engines/profile/rules/rule_engine.py,sha256=Xq0LEC8M6fqXTE5jBZz4OgEJEw_I8EPPQNmVRU02Q1I,39334
factorforge/io/__init__.py,sha256=3qpVj6OwZDIO_3N0LvDgpl1foWJYGGXKU0s8XgCiMkI,366
factorforge/io/fasta.py,sha256=rmrm82QnRqTiHHRiYx1yvVfxHmS5anf6WIfN6GqtqW8,4477
factorforge/io/validation.py,sha256=gtWQ6KRiNxUIYiUkzMxJBj-A7fGdTrxJ1hpoMAMMSHA,1818
factorforge/protein_risk/__init__.py,sha256=CV3dvMXEVieSmMIuH1xleRpPIhFP8an3vmzsyLRPaaY,163
factorforge/protein_risk/annotate.py,sha256=2-recAXp47JpQq3rlL5FpMOf572y7vSJQD1en70TzUI,1155
factorforge/protein_risk/kd_scale.py,sha256=kY6jPW9CeUwspZfZkG_ovdnDzwAWdlys2iVcWo-Bxjg,484
factorforge/protein_risk/risk_classifier.py,sha256=PlU9TUM3aa6crrx7rfyLIZUAHcbNrOWoQqohYneS5_8,461
factorforge/protein_risk/sp_predict.py,sha256=DZP43idfRwlZK7BjWawve3-INx-DhrPJOwJi7mGYVlc,585
factorforge/protein_risk/tm_predict.py,sha256=U2m0Xx3YkshulMRYG1TsfeW1R4dhYmAX8MUfaOBk2Qs,1222
factorforge/registry/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
factorforge/registry/registry_loader.py,sha256=i4KM4iHBm2C82vpmQuJkCOV9X6ieIACcs0wSfNUtxfk,577
factorforge/schemas/__init__.py,sha256=zGAbgAddVvQHHB9PJN9nUg0PMSvC2Ek1IV9Q0mILCdE,71
factorforge/schemas/design_package.py,sha256=AE_f-oteHK7nl0okMCYVqXotGFmQNskGHzAySFocTbk,3460
factorforge/schemas/design_package.schema.json,sha256=1SRQ7AEDSuUzp_ZZ3C4O5L4gEI76eBnuyXvJQvd5NaE,8492
factorforge/utils/__init__.py,sha256=eVjO8fMIHvVDHDV0BRCn0K0P8qm8HcSkefEjLWirF6I,697
factorforge/utils/construct_id.py,sha256=XELcAYkMUgeFJ4uD-fm3fpdcLQJI4QD_cmh6Isz6wbE,249
factorforge/utils/exceptions.py,sha256=cUp2h68CFYERtWynjsRZRPmDoNsAR_cOmaF9dfAUuCA,887
factorforge/utils/restriction_sites.py,sha256=g8w9s1rLdyr2aOHjj-olyM2AGBzP6ZBQilXxi8tsx3U,13010
factorforge/utils/sequence_validator.py,sha256=FZrTmVJyIQHvYWs8oXSkvLVzyPwOf3nasruZXgi7ZYk,5266
factorforge/utils/validation.py,sha256=Fxbh6ciGDBRAOClCAcASP1jUEVnZrNSxDQJexO5OrEk,3697
factorforge/validation/__init__.py,sha256=W4BhxhMQAdmW7YqhmU5Yh4Hsf2bzt82Mtxmf60YKhnU,100
factorforge/validation/cli.py,sha256=chrXu6vomjJvlX4fZjcuxpzBxeNMFm3In8lkSwshM44,3592
factorforge/validation/package_generator.py,sha256=tYizn2MtNMsQVxNqiccOwUyStEP7ylWG8qtDmIkrM54,7171
factorforge_cds-3.3.2.dist-info/licenses/LICENSE,sha256=DZak_2itbUtvHzD3E7GNUYSRK6jdOJ-GqncQ2weavLA,34523
factorforge_cds-3.3.2.dist-info/METADATA,sha256=3WTViE8xsaeNeLCWUxlWnznrPzU2_iBFAq7nRFO_Sc0,5877
factorforge_cds-3.3.2.dist-info/WHEEL,sha256=K260EYznzXsJYBQGqmI8VTxEdiZYNvDZwW9cBh9-_MA,91
factorforge_cds-3.3.2.dist-info/entry_points.txt,sha256=LjR3cK-ggOueEFt_qq3VYtqIHCuPY_OK0gDTg_bjmB8,112
factorforge_cds-3.3.2.dist-info/top_level.txt,sha256=UC9zn65IVQVE9NmBxsZzNYqBbQbFmIapVUZGWU4v0_s,12
factorforge_cds-3.3.2.dist-info/RECORD,,
