LICENSE.txt
README.md
pyproject.toml
src/paths/lamni_loader_paths.py
src/pyxalign/__init__.py
src/pyxalign/cli.py
src/pyxalign/dev_utils.py
src/pyxalign/estimate_center.py
src/pyxalign/fsc.py
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src/pyxalign/gpu_wrapper.py
src/pyxalign/image_processing.py
src/pyxalign/mask.py
src/pyxalign/missing_cone.py
src/pyxalign/model_functions.py
src/pyxalign/reconstruct.py
src/pyxalign/regularization.py
src/pyxalign/sart.py
src/pyxalign/test_utils.py
src/pyxalign/test_utils_2.py
src/pyxalign/unwrap.py
src/pyxalign.egg-info/PKG-INFO
src/pyxalign.egg-info/SOURCES.txt
src/pyxalign.egg-info/dependency_links.txt
src/pyxalign.egg-info/entry_points.txt
src/pyxalign.egg-info/requires.txt
src/pyxalign.egg-info/top_level.txt
src/pyxalign/alignment/base.py
src/pyxalign/alignment/cross_correlation.py
src/pyxalign/alignment/projection_matching.py
src/pyxalign/alignment/utils.py
src/pyxalign/api/__init__.py
src/pyxalign/api/constants.py
src/pyxalign/api/enums.py
src/pyxalign/api/maps.py
src/pyxalign/api/options_utils.py
src/pyxalign/api/types.py
src/pyxalign/api/options/__init__.py
src/pyxalign/api/options/alignment.py
src/pyxalign/api/options/base.py
src/pyxalign/api/options/device.py
src/pyxalign/api/options/options.py
src/pyxalign/api/options/plotting.py
src/pyxalign/api/options/projections.py
src/pyxalign/api/options/reconstruct.py
src/pyxalign/api/options/roi.py
src/pyxalign/api/options/task.py
src/pyxalign/api/options/tests.py
src/pyxalign/api/options/transform.py
src/pyxalign/autorunner/abstract.py
src/pyxalign/autorunner/autorunner.py
src/pyxalign/autorunner/config.py
src/pyxalign/autorunner/enums.py
src/pyxalign/autorunner/io.py
src/pyxalign/data_structures/__init__.py
src/pyxalign/data_structures/positions.py
src/pyxalign/data_structures/projections.py
src/pyxalign/data_structures/task.py
src/pyxalign/data_structures/volume.py
src/pyxalign/data_structures/xrf_projections.py
src/pyxalign/data_structures/xrf_task.py
src/pyxalign/gui/__init__.py
src/pyxalign/image_utils/__init__.py
src/pyxalign/interactions/__init__.py
src/pyxalign/interactions/alignment_results.py
src/pyxalign/interactions/combined_viewer.py
src/pyxalign/interactions/crop_3d_selector.py
src/pyxalign/interactions/cross_correlation.py
src/pyxalign/interactions/custom.py
src/pyxalign/interactions/fsc_window.py
src/pyxalign/interactions/initialize_projections.py
src/pyxalign/interactions/mask.py
src/pyxalign/interactions/master.py
src/pyxalign/interactions/phase_unwrap.py
src/pyxalign/interactions/pma_runner.py
src/pyxalign/interactions/point_selector.py
src/pyxalign/interactions/reconstruction_parameter_tuner.py
src/pyxalign/interactions/roi_selector.py
src/pyxalign/interactions/sidebar_navigator.py
src/pyxalign/interactions/autorunner/__init__.py
src/pyxalign/interactions/autorunner/initialization_widget.py
src/pyxalign/interactions/autorunner/wrapper.py
src/pyxalign/interactions/io/input_data_viewer.py
src/pyxalign/interactions/io/loader.py
src/pyxalign/interactions/options/options_editor.py
src/pyxalign/interactions/sequencer_v1/__init__.py
src/pyxalign/interactions/sequencer_v1/sequencer.py
src/pyxalign/interactions/sequencer_v1/sequencer_item.py
src/pyxalign/interactions/sequencer_v2/__init__.py
src/pyxalign/interactions/sequencer_v2/sequencer.py
src/pyxalign/interactions/sequencer_v2/sequencer_item.py
src/pyxalign/interactions/utils/loading_display_tools.py
src/pyxalign/interactions/utils/misc.py
src/pyxalign/interactions/viewers/__init__.py
src/pyxalign/interactions/viewers/array_1d_plotter.py
src/pyxalign/interactions/viewers/array_save_window.py
src/pyxalign/interactions/viewers/arrays.py
src/pyxalign/interactions/viewers/base.py
src/pyxalign/interactions/viewers/climit_window.py
src/pyxalign/interactions/viewers/projection_matching.py
src/pyxalign/interactions/viewers/task.py
src/pyxalign/interactions/viewers/utils.py
src/pyxalign/interactions/viewers/xrf.py
src/pyxalign/io/__init__.py
src/pyxalign/io/load.py
src/pyxalign/io/save.py
src/pyxalign/io/utils.py
src/pyxalign/io/file_readers/mda.py
src/pyxalign/io/loaders/__init__.py
src/pyxalign/io/loaders/base.py
src/pyxalign/io/loaders/enums.py
src/pyxalign/io/loaders/load_any.py
src/pyxalign/io/loaders/maps.py
src/pyxalign/io/loaders/utils.py
src/pyxalign/io/loaders/pear/__init__.py
src/pyxalign/io/loaders/pear/api.py
src/pyxalign/io/loaders/pear/base_loader.py
src/pyxalign/io/loaders/pear/fold_slice_loader_1.py
src/pyxalign/io/loaders/pear/fold_slice_loader_2.py
src/pyxalign/io/loaders/pear/nested_loader.py
src/pyxalign/io/loaders/pear/options.py
src/pyxalign/io/loaders/pear/pear_loader_1.py
src/pyxalign/io/loaders/pear/utils.py
src/pyxalign/io/loaders/xrf/__init__.py
src/pyxalign/io/loaders/xrf/api.py
src/pyxalign/io/loaders/xrf/base_loader.py
src/pyxalign/io/loaders/xrf/options.py
src/pyxalign/io/loaders/xrf/utils.py
src/pyxalign/plotting/plotters.py
src/pyxalign/plotting/results_analysis/volume_comparison.py
src/pyxalign/style/text.py
src/pyxalign/timing/io.py
src/pyxalign/timing/plotting.py
src/pyxalign/timing/timer_utils.py
src/pyxalign/transformations/classes.py
src/pyxalign/transformations/functions.py
src/pyxalign/transformations/helpers.py
src/pyxalign/utils/__init__.py
src/pyxalign_examples/__init__.py
src/pyxalign_examples/example_utils.py