LICENSE
README.md
pyproject.toml
setup.py
bulkdgd/__init__.py
bulkdgd/defaults.py
bulkdgd.egg-info/PKG-INFO
bulkdgd.egg-info/SOURCES.txt
bulkdgd.egg-info/dependency_links.txt
bulkdgd.egg-info/entry_points.txt
bulkdgd.egg-info/requires.txt
bulkdgd.egg-info/top_level.txt
bulkdgd/_internals/__init__.py
bulkdgd/_internals/util.py
bulkdgd/analysis/__init__.py
bulkdgd/analysis/_util.py
bulkdgd/analysis/dea.py
bulkdgd/analysis/reduction.py
bulkdgd/analysis/residuals.py
bulkdgd/configs/dimensionality_reduction/kpca.yaml
bulkdgd/configs/dimensionality_reduction/mds.yaml
bulkdgd/configs/dimensionality_reduction/pca.yaml
bulkdgd/configs/dimensionality_reduction/tsne.yaml
bulkdgd/configs/dimensionality_reduction/umap.yaml
bulkdgd/configs/genes/config_genes_list.yaml
bulkdgd/configs/model/model_lgmm.yaml
bulkdgd/configs/model/model_lgmm_trained.yaml
bulkdgd/configs/model/model_tgmm.yaml
bulkdgd/configs/model/model_tgmm_trained.yaml
bulkdgd/configs/plotting/boxplot.yaml
bulkdgd/configs/plotting/enrichplot.yaml
bulkdgd/configs/plotting/histogram.yaml
bulkdgd/configs/plotting/histogram_bihist.yaml
bulkdgd/configs/plotting/histogram_overlap.yaml
bulkdgd/configs/plotting/lineplot.yaml
bulkdgd/configs/plotting/scatterplot.yaml
bulkdgd/configs/plotting/violinplot.yaml
bulkdgd/configs/representations/one_opt.yaml
bulkdgd/configs/representations/two_opt.yaml
bulkdgd/configs/training/training_legacy.yaml
bulkdgd/configs/training/training_tgmm.yaml
bulkdgd/core/__init__.py
bulkdgd/core/_templates.py
bulkdgd/core/_util.py
bulkdgd/core/dataclasses.py
bulkdgd/core/decoders.py
bulkdgd/core/latents.py
bulkdgd/core/metrics.py
bulkdgd/core/model.py
bulkdgd/core/outputmodules.py
bulkdgd/core/priors.py
bulkdgd/data/model/genes/genes.txt
bulkdgd/data/model/gmm/gmm.pth
bulkdgd/execs/__init__.py
bulkdgd/execs/_bulkdgd_get_recount3_single_batch.py
bulkdgd/execs/bulkdgd_dea.py
bulkdgd/execs/bulkdgd_find_probdens.py
bulkdgd/execs/bulkdgd_find_representations.py
bulkdgd/execs/bulkdgd_get_genes.py
bulkdgd/execs/bulkdgd_get_recount3.py
bulkdgd/execs/bulkdgd_preprocess_samples.py
bulkdgd/execs/bulkdgd_reduction.py
bulkdgd/execs/bulkdgd_train.py
bulkdgd/execs/defaults.py
bulkdgd/execs/util.py
bulkdgd/genes/__init__.py
bulkdgd/genes/defaults.py
bulkdgd/genes/util.py
bulkdgd/ioutil/__init__.py
bulkdgd/ioutil/configio.py
bulkdgd/ioutil/decoutio.py
bulkdgd/ioutil/repio.py
bulkdgd/ioutil/samplesio.py
bulkdgd/plotting/__init__.py
bulkdgd/plotting/_defaults.py
bulkdgd/plotting/_templates.py
bulkdgd/plotting/_util.py
bulkdgd/plotting/plots.py
bulkdgd/recount3/__init__.py
bulkdgd/recount3/defaults.py
bulkdgd/recount3/util.py
bulkdgd/recount3/data/gtex_metadata_fields.txt
bulkdgd/recount3/data/readme.md
bulkdgd/recount3/data/sra_metadata_fields.txt
bulkdgd/recount3/data/tcga_metadata_fields.txt