numpy
scipy
pandas>=1.5.0
matplotlib>=3.4.0
rich-click>=1.7
biopython
requests
scikit-learn
pysam
pyfastx
cooler
pairtools

[dev]
pytest>=7.0
pytest-cov>=4.0
ruff>=0.4
pre-commit>=3.0
sphinx
sphinx-rtd-theme
ipython>=8.12.3
