LICENSE
README.md
pyproject.toml
code/scCairns.egg-info/PKG-INFO
code/scCairns.egg-info/SOURCES.txt
code/scCairns.egg-info/dependency_links.txt
code/scCairns.egg-info/entry_points.txt
code/scCairns.egg-info/requires.txt
code/scCairns.egg-info/top_level.txt
code/sccairns/__init__.py
code/sccairns/cli.py
code/sccairns/composition.py
code/sccairns/config.py
code/sccairns/contamination.py
code/sccairns/entropy.py
code/sccairns/inspect.py
code/sccairns/integrate.py
code/sccairns/record_filter.py
code/sccairns/stress.py
code/sccairns/summarize.py
tests/test_cli.py
tests/test_composition.py
tests/test_doublets.py
tests/test_entropy.py
tests/test_harmony.py
tests/test_inspection_decisions.py
tests/test_pipeline_config.py
tests/test_provenance.py
tests/test_qc_filter.py
tests/test_record_filter.py
tests/test_seed_threading.py
tests/test_stress.py
tests/test_summarize_rounds.py