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CHANGELOG.md
CITATION.cff
LICENSE
MANIFEST.in
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SECURITY.md
pyproject.toml
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docs/algorithm.md
docs/cell_level_design_reanalysis_20260907.md
docs/changelog.md
docs/citation.md
docs/conf.py
docs/deconv_science_validation_20260907.md
docs/design_audit_20260909.md
docs/faq.md
docs/fig1_design_gap_audit_20260907.md
docs/gse218853_cross_sample_intercept_20260907.md
docs/gse218853_marker_ambient_conflict_20260907.md
docs/index.md
docs/installation.md
docs/lessons_20260908.md
docs/license.md
docs/low_purity_subgroups_20260907.md
docs/quickstart.md
docs/references.md
docs/removal_audit_20260907.md
docs/requirements.txt
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docs/tutorials/external_cell_whitelists.ipynb
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src/ambidose/__init__.py
src/ambidose/__main__.py
src/ambidose/_budget.py
src/ambidose/_dose.py
src/ambidose/_droplets.py
src/ambidose/_ownership.py
src/ambidose/_shared.py
src/ambidose/_typing.py
src/ambidose/_version.py
src/ambidose/baselines.py
src/ambidose/cli.py
src/ambidose/datasets.py
src/ambidose/io.py
src/ambidose/metrics.py
src/ambidose/pl.py
src/ambidose/pp.py
src/ambidose/py.typed
src/ambidose/reporting.py
tests/test_ambient.py
tests/test_baselines.py
tests/test_cli.py
tests/test_dose.py
tests/test_edge_cases.py
tests/test_io.py
tests/test_metrics.py
tests/test_mustwin_barnyard.py
tests/test_product_workflow.py
tests/test_scenarios.py
tests/test_subtract.py
tests/test_version.py