cobra==0.24.0
python-libsbml>=5.19.0
optlang==1.5.2
pytfa>=0.9.1
sympy==1.6.2
numpy<2.0,>=1.23
scipy>=1.13
pandas<2.0,>=1.3.5
matplotlib>=3.9
networkx>=3.2
biopython>=1.85
openpyxl>=3.1
xlrd>=2.0
pydantic<2.0,>=1.10
tqdm>=4.60
rich>=13.0
six>=1.16
python-dateutil>=2.9

[all]
strainOptimizer[dev,omics]

[cplex]
cplex>=22.1

[dev]
pytest>=8.0
build>=1.0
twine>=5.0
ruff>=0.4

[gurobi]
gurobipy>=10.0

[omics]
troppo>=0.1
