GPSEA cohort analysis

Successfully loaded {{ n_individuals }} individuals.

{% if n_excluded > 0 %}

Not able to load {{ n_excluded }} individuals.

{% else %}

No errors encountered.

{% endif %} {% for hpo_count in hpo_counts %} {% endfor %}

Top {{top_hpo_count}} HPO Terms

A total of {{ total_hpo_count }} HPO terms were used to annotated the cohort.
HPO Term ID Seen in n individuals
{{ hpo_count.HPO }} {{ hpo_count.ID }} {{ hpo_count.Count }}
{% for var_count in var_counts %} {% endfor %}

Top {{top_var_count}} Variants

Variants are shown according to {{ transcript_id }}. A total of {{ unique_variant_count}} unique variants were identified in the cohort.
Count Variant key Variant Name Protein Variant Variant Class
{{ var_count.Count }} {{ var_count.variant }} {{ var_count.variant_name }} {{ var_count.protein_name }} {{ var_count.variant_effects }}
{% for disease_count in disease_counts %} {% endfor %}

Diseases

Disease Name Disease ID Annotation Count
{{ disease_count.disease_name }} {{ disease_count.disease_id }} {{ disease_count.count }}
{% if has_transcript > 0 %} {% for var_effect in var_effects_list %} {% endfor %}

Variant categories for {{ transcript_id }}

Variant effect Annotation Count Percent
{{ var_effect.effect }} {{ var_effect.count }} {{ var_effect.percent }}
{% else %}

Call this function with transcript to see table with variant effect counts.

{% endif %}