# repo secrets 
.env 
.env*

# python stuff 
.venv
.ruff_cache/
__pycache__/
*.py[cod]
*$py.class

.vscode/

# project specific files
/sample_metadata.tsv
/sample_metadata_*.tsv
*.vcf
*.vcf.gz
*.vcf.gz.csi
*.vcf.gz.tbi
!tests/fixtures/*.vcf.gz
tests/fixtures/temp*
tests/fixtures/merged*
divbase_metadata_template*.tsv

# query job config files
bcftools_divbase_job_config.json

# benchmarking files
vcf_dimensions.tsv
mock*.tsv
task_records*.json
split_scaffold_files.txt
scripts/benchmarking/*.yaml
scripts/benchmarking/results

# pytest-cov generate files
.coverage
.coverage.*
htmlcov/
docker/coverage-data/

#MacOS artifacts
.DS_Store

# mkdocs build cache
.cache/
# mkdocs auto generated files
docs/cli/_auto_generated/*.md
docs/releases/index.md

# pypi 
dist/
