from gwaslab.Sumstats import Sumstats
from gwaslab.preformat_input import preformat
## Sumstats Object

from gwaslab.Log import Log
## Log object

## QC
from gwaslab.fixdata import fixID
from gwaslab.fixdata import removedup
from gwaslab.fixdata import fixchr
from gwaslab.fixdata import fixpos
from gwaslab.fixdata import fixallele
from gwaslab.fixdata import parallelnormalizeallele
from gwaslab.fixdata import sanitycheckstats
from gwaslab.fixdata import parallelizeliftovervariant
from gwaslab.fixdata import flipallelestats
from gwaslab.fixdata import sortcoordinate
from gwaslab.fixdata import sortcolumn

from gwaslab.retrievedata import checkaf
from gwaslab.retrievedata import checkref
from gwaslab.retrievedata import rsidtochrpos
from gwaslab.retrievedata import parallelizeassignrsid
from gwaslab.retrievedata import inferstrand
from gwaslab.retrievedata import parallelrsidtochrpos

## utility
from gwaslab.filtervalue import filterout
from gwaslab.filtervalue import filterin
from gwaslab.mqqplot import mqqplot
from gwaslab.calculate_gc import gc
from gwaslab.getsig import getsig
from gwaslab.liftover_snv import liftover_variant
from gwaslab.fill import filldata
from gwaslab.plotrg import plot_rg
# to format
from gwaslab.to_formats import tobed
from gwaslab.to_formats import tofuma
from gwaslab.to_formats import toldsc
from gwaslab.get_hapmap3 import gethapmap3

# standalone function
from gwaslab.compare_effect import compare_effect
from gwaslab.compare_effect import plotdaf
from gwaslab.read_ldsc import read_ldsc
from gwaslab.h2_conversion import h2_obs_to_liab
from gwaslab.h2_conversion import getpersnph2
from gwaslab.h2_conversion import h2_se_to_p

from gwaslab.CommonData import get_chr_NC_dict
from gwaslab.CommonData import get_chr_list
from gwaslab.CommonData import get_number_to_chr
from gwaslab.CommonData import get_chr_to_number