LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
src/robust_deid/__init__.py
src/robust_deid/dataset_splitter.py
src/robust_deid/model_helpers.py
src/robust_deid/recall_threshold.py
src/robust_deid/sequence_dataset.py
src/robust_deid/sequence_tagger.py
src/robust_deid/utils.py
src/robust_deid.egg-info/PKG-INFO
src/robust_deid.egg-info/SOURCES.txt
src/robust_deid.egg-info/dependency_links.txt
src/robust_deid.egg-info/not-zip-safe
src/robust_deid.egg-info/top_level.txt
src/robust_deid/arguments/__init__.py
src/robust_deid/arguments/data_training_arguments.py
src/robust_deid/arguments/model_arguments.py
src/robust_deid/deidentification/__init__.py
src/robust_deid/deidentification/deidentification_types.py
src/robust_deid/deidentification/text_deidentification.py
src/robust_deid/metrics/__init__.py
src/robust_deid/metrics/sequence_metrics.py
src/robust_deid/metrics/token_evaluation.py
src/robust_deid/model_outputs/__init__.py
src/robust_deid/model_outputs/note_aggregate.py
src/robust_deid/model_outputs/post_process.py
src/robust_deid/sequence_datasets/__init__.py
src/robust_deid/sequence_datasets/builder/__init__.py
src/robust_deid/sequence_datasets/builder/dataset_builder.py
src/robust_deid/sequence_datasets/builder/sequence_dataset.py
src/robust_deid/sequence_datasets/labels/__init__.py
src/robust_deid/sequence_datasets/labels/align.py
src/robust_deid/sequence_datasets/labels/align_token_labels.py
src/robust_deid/sequence_datasets/labels/label_info.py
src/robust_deid/sequence_datasets/labels/mismatch_error.py
src/robust_deid/sequence_datasets/labels/span_fixer.py
src/robust_deid/sequence_datasets/sequences/__init__.py
src/robust_deid/sequence_datasets/sequences/sequence_chunker.py
src/robust_deid/sequence_datasets/sequences/utils.py
src/robust_deid/sequence_datasets/setup/__init__.py
src/robust_deid/sequence_datasets/setup/merge_files.py
src/robust_deid/sequence_datasets/setup/distribution/__init__.py
src/robust_deid/sequence_datasets/setup/distribution/dataset_splits.py
src/robust_deid/sequence_datasets/setup/distribution/ner_distribution.py
src/robust_deid/sequence_datasets/setup/distribution/print_distribution.py
src/robust_deid/sequence_datasets/text_tokenizers/__init__.py
src/robust_deid/sequence_datasets/text_tokenizers/hf_subword_tokenizer.py
src/robust_deid/sequence_datasets/text_tokenizers/spacy_tokenizer.py
src/robust_deid/sequence_datasets/text_tokenizers/subword_tokenizer.py
src/robust_deid/sequence_datasets/text_tokenizers/tokenizer.py
src/robust_deid/sequence_datasets/text_tokenizers/utils.py
src/robust_deid/sequence_datasets/text_transformations/__init__.py
src/robust_deid/sequence_datasets/text_transformations/text_transform.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/__init__.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/noise/__init__.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/noise/character_noise_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/__init__.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/age_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/augment_type.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/augmenter.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/date_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/date_patterns.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/email_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/id_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/location_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/name_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/other_phi_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/patient_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/patorg.txt
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/patorg_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/phone_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/staff_augment.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/utils.py
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/acronyms.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/assisted_living.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/hospitals.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/hospitals_full.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/ids.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/location_ids.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/locations.json
src/robust_deid/sequence_datasets/text_transformations/augmentations/phi/hospital/pharmacies.json
src/robust_deid/training/__init__.py
src/robust_deid/training/training.py