license.txt
pyproject.toml
readme.rst
thoipapy/__init__.py
thoipapy/artefacts.py
thoipapy/common.py
thoipapy/paths.py
thoipapy/predict.py
thoipapy/run.py
thoipapy/run_settings.py
thoipapy/utils.py
thoipapy.egg-info/PKG-INFO
thoipapy.egg-info/SOURCES.txt
thoipapy.egg-info/dependency_links.txt
thoipapy.egg-info/requires.txt
thoipapy.egg-info/top_level.txt
thoipapy/ML_model/THOIPA_trained_ML_model.lpkl
thoipapy/ML_model/__init__.py
thoipapy/ML_model/model_features.txt
thoipapy/ML_model/train_model.py
thoipapy/ML_model/tune.py
thoipapy/clustering/__init__.py
thoipapy/clustering/pairwise_aln_similarity_matrix.py
thoipapy/experimental_data/__init__.py
thoipapy/experimental_data/add_experimental_data_to_train_set.py
thoipapy/experimental_data/closest_heavy_atom_dist.py
thoipapy/experimental_data/convert_bind_data_to_csv.py
thoipapy/experimental_data/remove_hetero_contacts.py
thoipapy/experimental_data/ttest_features.py
thoipapy/feature_importance/__init__.py
thoipapy/feature_importance/anova.py
thoipapy/feature_importance/ensemble_rfe.py
thoipapy/feature_importance/mean_decrease_accuracy.py
thoipapy/feature_importance/mean_decrease_impurity.py
thoipapy/feature_importance/merge.py
thoipapy/feature_importance/plots.py
thoipapy/feature_importance/remove_duplicates.py
thoipapy/features/__init__.py
thoipapy/features/combine_features.py
thoipapy/features/entropy.py
thoipapy/features/freecontact.py
thoipapy/features/lipophilicity.py
thoipapy/features/lips.py
thoipapy/features/motifs.py
thoipapy/features/normalise_features.py
thoipapy/features/physical_parameters.py
thoipapy/features/preddimer_tmdock.py
thoipapy/features/pssm.py
thoipapy/features/rate4site.py
thoipapy/features/relative_position.py
thoipapy/homologues/NCBI_download.py
thoipapy/homologues/NCBI_parser.py
thoipapy/homologues/__init__.py
thoipapy/paper_figures/__init__.py
thoipapy/paper_figures/calc_PREDDIMER_TMDOCK_closedist.py
thoipapy/paper_figures/combine_BOcurve_files.py
thoipapy/paper_figures/create_BOcurve_files.py
thoipapy/paper_figures/create_heatmap_from_merge_file.py
thoipapy/paper_figures/retrospective.py
thoipapy/setting/Physical_Property_csv.txt
thoipapy/setting/__init__.py
thoipapy/setting/hydrophobicity_scales.csv
thoipapy/setting/model_features.csv
thoipapy/setting/module_parameters.txt
thoipapy/setting/run_settings_example.csv
thoipapy/setting/selected_predictors.csv
thoipapy/setting/standalone_run_settings.csv
thoipapy/validation/__init__.py
thoipapy/validation/auc.py
thoipapy/validation/bocurve.py
thoipapy/validation/combine_mult_predictors.py
thoipapy/validation/feature_selection.py
thoipapy/validation/gather.py
thoipapy/validation/indiv_validation.py
thoipapy/validation/leave_one_out.py
thoipapy/validation/multiple_predictors.py
thoipapy/validation/precision_recall.py
thoipapy/validation/random_interface.py
thoipapy/validation/roc.py
thoipapy/validation/tenfold.py
thoipapy/validation/testset_trainset.py