IntegronFinder
2.0.5
  • User Guide
    • Introduction
    • Installation
      • IntegronFinder dependencies
      • Installation procedure
        • From Version 2.0
        • From Version 1.5.1 and after
        • For Version 1.5 and before
      • Uninstallation procedure
        • From Version 1.5.1 and after
        • From Version 1.0 to Version 1.5
      • How to install Python
    • What’s new ?
      • V2.0.5
      • V2.0.3
      • In Version 2.0
    • Quick start
      • For impatient
      • Input and Outputs
        • Inputs
        • Custom protein file
        • Outputs
      • For everyone
        • Thorough local detection
        • CALIN detection
        • Functional annotation
        • Search for promoter and attI sites
        • Keep intermediate results
        • Topology
      • For big data people
        • Parallelization
      • For integron diggers
        • Clustering of elements
        • Integrase
        • attC evalue
        • attC size
        • Palindromes
        • attC alignements
    • web server
      • Galaxy
        • How to use it
        • Results
    • References
  • Developer Guide
    • Developer installation
    • Build a new release
    • Send changes to upstream repository
    • Tests
      • Running tests
      • Adding tests
    • Documentation
    • Architecture Overview
      • Project files and directories
        • Files
        • Directories
      • Technical overview
    • Integron_finder API Reference
      • annotation
        • add_feature()
        • func_annot()
      • attc
        • find_attc_max()
        • search_attc()
      • config
        • Config
      • hmm
        • read_hmm()
        • scan_hmm_bank()
      • infernal
        • expand()
        • find_attc()
        • local_max()
        • read_infernal()
      • integrase
        • find_integrase()
      • integron
        • Integron
        • find_integron()
      • prot_db
        • GembaseDB
        • ProdigalDB
        • ProteinDB
        • SeqDesc
      • results
        • _log
        • filter_calin()
        • integrons_report()
        • merge_results()
        • summary()
      • topology
        • Topology
      • utils
        • FastaIterator
        • get_name_from_path()
        • log_level()
        • make_multi_fasta_reader()
        • model_len()
        • read_multi_fasta()
IntegronFinder
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  • Developer Guide
  • View page source

Developer Guide

  • Developer installation
  • Build a new release
  • Send changes to upstream repository
  • Tests
    • Running tests
    • Adding tests
  • Documentation
  • Architecture Overview
    • Project files and directories
    • Technical overview
  • Integron_finder API Reference
    • annotation
    • attc
    • config
    • hmm
    • infernal
    • integrase
    • integron
    • prot_db
    • results
    • topology
    • utils
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