LICENSE
README.md
pyproject.toml
biosuite/__init__.py
biosuite/api/__init__.py
biosuite/api/server.py
biosuite/cli/__init__.py
biosuite/cli/menu.py
biosuite/core/__init__.py
biosuite/core/alignment.py
biosuite/core/assembly.py
biosuite/core/bayesian_phylogeny.py
biosuite/core/bio_ml.py
biosuite/core/blast.py
biosuite/core/cloning.py
biosuite/core/codon_usage.py
biosuite/core/crispr.py
biosuite/core/databases.py
biosuite/core/docking.py
biosuite/core/enrichment.py
biosuite/core/epigenomics.py
biosuite/core/epitope.py
biosuite/core/expression.py
biosuite/core/file_formats.py
biosuite/core/go_browser.py
biosuite/core/gwas.py
biosuite/core/log.py
biosuite/core/md_simulation.py
biosuite/core/metabolism.py
biosuite/core/metabolomics.py
biosuite/core/metagenomics.py
biosuite/core/ml_phylogeny.py
biosuite/core/msa.py
biosuite/core/ngs.py
biosuite/core/orf_finder.py
biosuite/core/parallel.py
biosuite/core/pathway_viz.py
biosuite/core/peak_calling.py
biosuite/core/phylogeny.py
biosuite/core/plugin.py
biosuite/core/popgen.py
biosuite/core/provenance.py
biosuite/core/quantification.py
biosuite/core/read_aligner.py
biosuite/core/sequence.py
biosuite/core/single_cell.py
biosuite/core/structure.py
biosuite/core/structure_prediction.py
biosuite/core/survival.py
biosuite/core/trimming.py
biosuite/core/utils.py
biosuite/core/validators.py
biosuite/core/variant_calling.py
biosuite/core/workflow/__init__.py
biosuite/core/workflow/batch.py
biosuite/core/workflow/pipeline.py
biosuite/core/workflow/report.py
biosuite/gui/__init__.py
biosuite/gui/dialogs.py
biosuite/gui/main_window.py
biosuite/gui/themes.py
biosuite/gui/tabs/__init__.py
biosuite/gui/tabs/advanced.py
biosuite/gui/tabs/cloning.py
biosuite/gui/tabs/databases.py
biosuite/gui/tabs/genomics.py
biosuite/gui/tabs/help.py
biosuite/gui/tabs/metabolomics.py
biosuite/gui/tabs/sequence_analysis.py
biosuite/gui/tabs/survival.py
biosuite/gui/tabs/transcriptomics.py
biosuite/gui/tabs/visualization.py
biosuite/gui/tabs/workflow.py
biosuite/notebook/__init__.py
biosuite/plotting/__init__.py
biosuite/plotting/biological_plots.py
biosuite/plotting/conservation_plots.py
biosuite/plotting/genome_browser.py
biosuite/plotting/interactive_plots.py
biosuite/plotting/math_plots.py
biosuite/plotting/network_plots.py
biosuite/plotting/plasmid_map.py
biosuite/plotting/plot_api.py
biosuite/plotting/sequence_viewer.py
biosuite/plotting/specialized_plots.py
biosuite/plotting/synteny.py
biosuite/plotting/upset_plots.py
biosuite_ultra.egg-info/PKG-INFO
biosuite_ultra.egg-info/SOURCES.txt
biosuite_ultra.egg-info/dependency_links.txt
biosuite_ultra.egg-info/entry_points.txt
biosuite_ultra.egg-info/requires.txt
biosuite_ultra.egg-info/top_level.txt
tests/test_alignment.py
tests/test_api.py
tests/test_assembly_trimming.py
tests/test_blast.py
tests/test_cli.py
tests/test_cloning_and_viewer.py
tests/test_comprehensive.py
tests/test_crispr_popgen_epitope.py
tests/test_databases.py
tests/test_databases_and_tools.py
tests/test_enrichment_gwas.py
tests/test_expression.py
tests/test_file_formats.py
tests/test_gui_all_modules.py
tests/test_interactive_plots.py
tests/test_msa.py
tests/test_notebook.py
tests/test_orf_finder.py
tests/test_phase3_integration.py
tests/test_phase3_plotting.py
tests/test_phase4.py
tests/test_phase5.py
tests/test_phase6.py
tests/test_phylogeny.py
tests/test_plotting_uncovered.py
tests/test_sequence.py
tests/test_shared_utilities.py
tests/test_uncovered_modules.py
tests/test_untested_modules.py
tests/test_utils_shared.py