.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
Makefile
README.md
SECURITY.md
codecov.yml
noxfile.py
pyproject.toml
.github/PULL_REQUEST_TEMPLATE.md
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.github/ISSUE_TEMPLATE/bug_report.yml
.github/ISSUE_TEMPLATE/feature_request.yml
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.github/workflows/web-interface-ci.yml
.github/workflows/web-interface-pages.yml
config/coord2region-config.template.yaml
coord2region/__init__.py
coord2region/_version.py
coord2region/ai_helpers.py
coord2region/ai_model_interface.py
coord2region/ai_reports.py
coord2region/cli.py
coord2region/config.py
coord2region/coord2region.py
coord2region/coord2study.py
coord2region/fetching.py
coord2region/llm.py
coord2region/paths.py
coord2region/pipeline.py
coord2region.egg-info/PKG-INFO
coord2region.egg-info/SOURCES.txt
coord2region.egg-info/dependency_links.txt
coord2region.egg-info/entry_points.txt
coord2region.egg-info/requires.txt
coord2region.egg-info/top_level.txt
coord2region/utils/__init__.py
coord2region/utils/file_handler.py
coord2region/utils/image_utils.py
coord2region/utils/paths.py
coord2region/utils/utils.py
docs/Makefile
docs/source/CITATION.cff
docs/source/api_reference.rst
docs/source/changelog.rst
docs/source/conf.py
docs/source/developer_guide.rst
docs/source/documentation.rst
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docs/source/install.rst
docs/source/sg_execution_times.rst
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docs/source/_static/version_switcher.json
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docs/source/_static/images/logo.png
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docs/source/documentation/atlases.rst
docs/source/documentation/citation.rst
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docs/source/documentation/coc.rst
docs/source/documentation/contributors.rst
docs/source/documentation/design_philosophy.rst
docs/source/documentation/glossary.rst
docs/source/documentation/pipeline.rst
docs/source/documentation/providers.rst
docs/source/documentation/tutorials.rst
docs/source/documentation/web_interface.rst
docs/source/documentation/workflow.rst
docs/source/install/conda_mamba.rst
docs/source/install/config_workdirs.rst
docs/source/install/ide_integration.rst
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docs/source/install/upgrading.rst
docs/source/install/verification.rst
docs/source/install/virtualenv_pip.rst
docs/static/schema.json
examples/README.rst
examples/ai_image_workflow.py
examples/ai_reasoned_report.py
examples/ai_text_summary.py
examples/custom_provider_example.py
examples/example_0_simple_atlas.py
examples/example_10_image_providers.py
examples/example_11_local_huggingface.py
examples/example_12_nilearn_backend.py
examples/example_13_aparc.py
examples/example_14_batch_aparc.py
examples/example_15_multi_aparc.py
examples/example_1_harvard-oxford.py
examples/example_2_batch_harvard.py
examples/example_3_multi.py
examples/example_4_study.py
examples/example_5_multi_atlas_coords_and_studies_querying.py
examples/example_6_dataset_cache.py
examples/example_7_ai_providers.py
examples/example_8_conditional_provider_activation.py
examples/example_9_output_formats.py
examples/example_pipeline.py
examples/mapped_coordinates.csv
examples/plot_atlas_mapping.py
examples/plot_coord2study.py
examples/plot_fetching.py
examples/plot_fmri_coord_to_region.py
examples/plot_ieeg_electrode_localization.py
examples/plot_meg_source_localization.py
examples/plot_pipeline_basic.py
examples/toy_coordinates.csv
examples/ai_examples_outputs/nilearn_reference.png
paper/Webinterface.png
paper/combined_viz.png
paper/paper.bib
paper/paper.md
paper/workflow.jpg
paper/workflow.pdf
scripts/configure_coord2region.py
scripts/generate_schema.py
tests/__init__.py
tests/conftest.py
tests/pytest.ini
tests/test_ai_helpers.py
tests/test_ai_model_interface.py
tests/test_ai_reports.py
tests/test_cli.py
tests/test_config.py
tests/test_coord2region.py
tests/test_coord2study.py
tests/test_fetch.py
tests/test_file_handler.py
tests/test_image_utils.py
tests/test_llm.py
tests/test_paths.py
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web-interface/Gemfile
web-interface/Gemfile.lock
web-interface/README.md
web-interface/_config.yml
web-interface/about.md
web-interface/builder.md
web-interface/cloud.md
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web-interface/package-lock.json
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web-interface/playwright.config.ts
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web-interface/.vscode/tasks.json
web-interface/_includes/head.html
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web-interface/_site/package.json
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web-interface/tests/ui/builder-smoke.spec.ts
web-interface/tests/ui/config_builder.spec.ts
web-interface/website/index.html
web-interface/website/src/ConfigBuilder.tsx
web-interface/website/src/configBuilder.css
web-interface/website/src/main.tsx