Calling signature:
gptwosample [-h] [-o DIR] [-t] [-c N] [-p] [-v] [--version] [--backend [PDF,...]] FILE FILE
where:
FILE treatment/control files to compare against each other
-h, --help show this help message and exit
-o DIR, --out DIR set output dir [default: ./twosample_out/]
-t, --timeshift account for timeshifts in data [default: False]
-c N, --confounder N account for N confounders in data [default: 0]
-p, --plot plot data into outdir/plots? [default: False]
-v, --verbose set verbosity level [default: 0]
--version show program's version number and exit
--backend [PDF,...] matplotlib backend - see matplotlib.use(backend)
The format of the two .csv files (FILE FILE in usage) is as follows:
arbitrary x1 ... xl Gene ID 1 y1 replicate 1 ... yl replicate 1 ... ... ... ... Gene ID 1 y1 replicate k1 ... yl replicate k1 ... Gene ID n y1 replicate 1 ... yl replicate 1 ... ... ... ... Gene ID n y1 replicate kn ... yl replicate kn
See gptwosample/examples/ToyCondition{1,2].csv for example data files. All values, which cannot be translated by float() will be treated as missing values in the model.