Metadata-Version: 2.4
Name: spatiaxen
Version: 2.0.1
Summary: Interactive platform for cell-type-resolved spatial transcriptomics analysis of Xenium data.
Author: Erin Purcell, Mark Reimers
Author-email: Anirban Chakraborty <chakra96@msu.edu>
License: MIT
Project-URL: Homepage, https://reil.iq.msu.edu
Project-URL: Paper, https://www.biorxiv.org/content/10.64898/2026.03.12.711361v1
Keywords: spatial transcriptomics,Xenium,single cell,kernel density,GUI
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.10
Classifier: Environment :: X11 Applications :: Qt
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Operating System :: OS Independent
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: PyQt6>=6.5
Requires-Dist: numpy>=1.24
Requires-Dist: scipy>=1.10
Requires-Dist: pandas>=2.0
Requires-Dist: pyarrow>=12.0
Requires-Dist: matplotlib>=3.7
Requires-Dist: tifffile>=2023.7.10
Provides-Extra: images
Requires-Dist: imagecodecs>=2023.7.10; extra == "images"
Provides-Extra: full
Requires-Dist: imagecodecs>=2023.7.10; extra == "full"
Requires-Dist: torch>=2.0; extra == "full"
Requires-Dist: cellpose>=4.0; extra == "full"
Requires-Dist: scikit-image>=0.21; extra == "full"
Dynamic: license-file

# SpatiaXen — pip package

Install and launch SpatiaXen with pip (for users who already have Python 3.10+).

```bash
pip install spatiaxen
spatiaxen            # launches the GUI
```

`python -m spatiaxen` works too.

> For non-programmers, use the ready-made **macOS `.dmg`** or **Windows `.exe`**
> installers instead (no Python needed).
