# Generated by Cargo
# will have compiled files and executables
/debug/
/target/
/Cargo.lock

# These are backup files generated by rustfmt
**/*.rs.bk

# MSVC Windows builds of rustc generate these, which store debugging information
src/rust/**/*.pdb

# Ignore the distribution directories
dist/
build/
doc/_build/
*.egg-info/

# Ignore folder created by mypy
.mypy_cache/

# Ignore folder created by pytest
.pytest_cache
htmlcov
.coverage
.eggs
.cache

# Ignore version file created by hatch-vcs
/src/biotite/version.py

# Ignore third-party license file generated at build time by cargo-bundle-licenses
/THIRDPARTY.yml

# Ignore internal CCD
/src/biotite/structure/info/components.bcif

# Ignore autogenerated documentation files
/doc/static/switcher.json
/doc/apidoc
/doc/examples/gallery
/doc/examples/backreferences
/doc/sg_execution_times.rst

# Ignore autogenerated tutorial
/doc/tutorial/target

# Ignore files created via Cython
*.c
*.cpp
*.so
*.pyd

# Ignore all compiled python files (e.g. from running the unit tests)
*.pyc
*.pyo
*.py-e

# Ignore potential directory created during install
biotite.egg-info

# Pixi environments
.pixi/*

# Marker file used by the `_current-date` pixi task
/.date

# Ignore IntelliJ IDEA directory and project files
.idea
*.iml

# Ignore Eclipse project files
.project
.pydevproject

# Ignore Visual studio code project files
*.code-workspace
.vscode/*

# Ignore Zed project files
.zed/*

# Ignore hidden OS related files
*.fuse_hidden*
.DS_Store

# Ignore temp files created via Jupyter
**/.ipynb_checkpoints/

# Ignore instructions for AI assistants
.claude/
CLAUDE.md
