CHANGELOG.md
INTEGRATION.md
LICENSE
MANIFEST.in
README.md
READ_FIRST.zh.md
pyproject.toml
requirements-tested.txt
docs/api.md
docs/community_integration.md
docs/input_contracts.md
docs/release_process.md
docs/scientific_design.md
docs/validation.md
provenance/CURRENT_RELEASE.json
provenance/ORIGINAL_RELEASE.json
provenance/ORIGINAL_SHA256SUMS.txt
scripts/README.md
scripts/check_installation.py
scripts/check_tutorials.py
scripts/curate_replogle.py
scripts/curate_tcell.py
src/pertrank/__init__.py
src/pertrank/_version.py
src/pertrank/api.py
src/pertrank/core.py
src/pertrank/datasets.py
src/pertrank/evaluation.py
src/pertrank/py.typed
src/pertrank.egg-info/PKG-INFO
src/pertrank.egg-info/SOURCES.txt
src/pertrank.egg-info/dependency_links.txt
src/pertrank.egg-info/requires.txt
src/pertrank.egg-info/top_level.txt
src/pertrank/data/replogle_k562.npz
src/pertrank/data/replogle_k562.provenance.json
src/pertrank/data/tcell_d3_rest.npz
src/pertrank/data/tcell_d3_rest.provenance.json
tests/REFERENCE_PROVENANCE.json
tests/conftest.py
tests/reference_core_v21_1.py
tests/test_anndata_api.py
tests/test_core_contract.py
tests/test_evaluation.py
tests/test_packaged_data.py
tutorials/00_anndata_quickstart.py
tutorials/01_replogle.html
tutorials/01_replogle.ipynb
tutorials/02_tcell.html
tutorials/02_tcell.ipynb
validation/RELEASE_VALIDATION.json
validation/installed_identity.json
validation/requirements-resolved.txt
validation/source_tests.log
validation/wheel_tests.log